Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0884
         (678 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060631-1|AAL28179.1|  338|Drosophila melanogaster GH04905p pro...    29   5.8  
AY051868-1|AAK93292.1|  320|Drosophila melanogaster LD36375p pro...    29   5.8  
AE013599-992|AAM71050.2|  443|Drosophila melanogaster CG1407-PA,...    29   5.8  
AE013599-991|AAF58860.3|  338|Drosophila melanogaster CG1407-PB,...    29   5.8  

>AY060631-1|AAL28179.1|  338|Drosophila melanogaster GH04905p
           protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 548 IHFXPSXYYVLVI*Y*XIYRTYDAITSLMQIM*FFRRNVGKFN 420
           ++F    Y+VL + Y  +Y  Y A TSL   + F++   G+ N
Sbjct: 166 VNFYNYKYFVLFLGYALVYCLYVAFTSLHDFVEFWKVGAGQLN 208


>AY051868-1|AAK93292.1|  320|Drosophila melanogaster LD36375p
           protein.
          Length = 320

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 548 IHFXPSXYYVLVI*Y*XIYRTYDAITSLMQIM*FFRRNVGKFN 420
           ++F    Y+VL + Y  +Y  Y A TSL   + F++   G+ N
Sbjct: 43  VNFYNYKYFVLFLGYALVYCLYVAFTSLHDFVEFWKVGAGQLN 85


>AE013599-992|AAM71050.2|  443|Drosophila melanogaster CG1407-PA,
           isoform A protein.
          Length = 443

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 548 IHFXPSXYYVLVI*Y*XIYRTYDAITSLMQIM*FFRRNVGKFN 420
           ++F    Y+VL + Y  +Y  Y A TSL   + F++   G+ N
Sbjct: 166 VNFYNYKYFVLFLGYALVYCLYVAFTSLHDFVEFWKVGAGQLN 208


>AE013599-991|AAF58860.3|  338|Drosophila melanogaster CG1407-PB,
           isoform B protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 548 IHFXPSXYYVLVI*Y*XIYRTYDAITSLMQIM*FFRRNVGKFN 420
           ++F    Y+VL + Y  +Y  Y A TSL   + F++   G+ N
Sbjct: 166 VNFYNYKYFVLFLGYALVYCLYVAFTSLHDFVEFWKVGAGQLN 208


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,687,031
Number of Sequences: 53049
Number of extensions: 411755
Number of successful extensions: 569
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)