Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0884
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   8.2  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 591 NGLSCKVAKMSLKPNTF 541
           NG++C      L PNTF
Sbjct: 319 NGIACWDTNTELNPNTF 335


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 388 NYIYIHIYSKMLNFPTFLLKNYIICISDVIAS 483
           NY+ +H +   LN P+  +     C  + I S
Sbjct: 379 NYLTVHSFPSTLNIPSVKIDEDQKCSIESITS 410


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 457 LCNFSGETLENSTSYYIYVYICNSY 383
           LC F    +E S+S     Y C+ Y
Sbjct: 173 LCIFGNRLIEESSSVMEAAYSCHWY 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,298
Number of Sequences: 438
Number of extensions: 3290
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)