Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0881
         (678 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004481-1|AAO42645.1|  771|Drosophila melanogaster LD34250p pro...    31   1.1  
AE014298-1948|AAF48305.1|  789|Drosophila melanogaster CG9941-PA...    31   1.1  

>BT004481-1|AAO42645.1|  771|Drosophila melanogaster LD34250p
           protein.
          Length = 771

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 55  GTS*NISKLLHKSFNNVHSVISEGFCDNIMNILLFIEYSLPDLFD*KKKHNGSTNRTQPQ 234
           G S  + K LHK   +V +++  G    ++++      SLPD+ D     N ++ R+   
Sbjct: 675 GFSSAVKKNLHKKSTSVGNMVGSGSVTTVVDLKSNNVSSLPDMLDSPISGNSASTRSSSD 734

Query: 235 HYCSLHET 258
            Y S   T
Sbjct: 735 SYSSSSST 742


>AE014298-1948|AAF48305.1|  789|Drosophila melanogaster CG9941-PA
           protein.
          Length = 789

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +1

Query: 55  GTS*NISKLLHKSFNNVHSVISEGFCDNIMNILLFIEYSLPDLFD*KKKHNGSTNRTQPQ 234
           G S  + K LHK   +V +++  G    ++++      SLPD+ D     N ++ R+   
Sbjct: 693 GFSSAVKKNLHKKSTSVGNMVGSGSVTTVVDLKSNNVSSLPDMLDSPISGNSASTRSSSD 752

Query: 235 HYCSLHET 258
            Y S   T
Sbjct: 753 SYSSSSST 760


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,537,757
Number of Sequences: 53049
Number of extensions: 349301
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2951284050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)