Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0881
(678 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein RJP... 24 1.2
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 24 1.5
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 24 1.5
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 24 1.5
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 24 1.5
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 24 1.5
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 24 1.5
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 24 1.5
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 24 1.5
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 24 1.5
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 22 4.7
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 22 4.7
>Z26319-1|CAA81228.1| 464|Apis mellifera royal jelly protein
RJP57-2 protein.
Length = 464
Score = 24.2 bits (50), Expect = 1.2
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 158 LSSTLCQIYLIEKKNTMEV---PIEHNHNTIVHFMKHSRDRL 274
+ ST +Y+++ KNT+ + + H H + H+ D++
Sbjct: 195 MDSTNTMVYMVDNKNTLIIYQNADDSFHRLSSHTLNHNSDKM 236
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 471 NFNNTNVFGNYFFKKKLFCQIN 406
N+NN N NY KKL+ IN
Sbjct: 93 NYNNYNNNNNYNNYKKLYYNIN 114
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 471 NFNNTNVFGNYFFKKKLFCQIN 406
N+NN N NY KKL+ IN
Sbjct: 93 NYNNYNNNNNYNNYKKLYYNIN 114
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 471 NFNNTNVFGNYFFKKKLFCQIN 406
N+NN N NY KKL+ IN
Sbjct: 93 NYNNYNNNNNYNNYKKLYYNIN 114
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 471 NFNNTNVFGNYFFKKKLFCQIN 406
N+NN N NY KKL+ IN
Sbjct: 93 NYNNYNNNNNYNNYKKLYYNIN 114
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 471 NFNNTNVFGNYFFKKKLFCQIN 406
N+NN N NY KKL+ IN
Sbjct: 93 NYNNYNNNNNYNNYKKLYYNIN 114
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 471 NFNNTNVFGNYFFKKKLFCQIN 406
N+NN N NY KKL+ IN
Sbjct: 93 NYNNYNNNNNYNNYKKLYYNIN 114
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 471 NFNNTNVFGNYFFKKKLFCQIN 406
N+NN N NY KKL+ IN
Sbjct: 93 NYNNYNNNNNYNNYKKLYYNIN 114
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 23.8 bits (49), Expect = 1.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 471 NFNNTNVFGNYFFKKKLFCQIN 406
N+NN N NY KKL+ IN
Sbjct: 93 NYNNYNNNNNYNNYKKLYYNIN 114
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 504 SLATLTYHCRINFNNTNVFGNY 439
SL+ T H N+NN N NY
Sbjct: 317 SLSNKTIHNNNNYNNNNYNNNY 338
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 513 SSISLATL-TYHCRINFNNTNVFGNYFFKKKLFCQI 409
SS+S T+ + + N+NN N + N + KKL+ I
Sbjct: 82 SSLSNNTIHNNNYKYNYNNNN-YNNNNYNKKLYYNI 116
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 22.2 bits (45), Expect = 4.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 513 SSISLATL-TYHCRINFNNTNVFGNYFFKKKLFCQI 409
SS+S T+ + + N+NN N + N + KKL+ I
Sbjct: 82 SSLSNNTIHNNNYKYNYNNNN-YNNNNYNKKLYYNI 116
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,430
Number of Sequences: 438
Number of extensions: 2978
Number of successful extensions: 12
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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