Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0877
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YN11 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_A0AMD6 Cluster: Complete genome; n=1; Listeria welshime...    33   6.3  
UniRef50_Q4YRK7 Cluster: Putative uncharacterized protein; n=1; ...    33   8.3  
UniRef50_O13900 Cluster: Pre-mRNA-splicing factor sap114; n=1; S...    33   8.3  

>UniRef50_Q4YN11 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 848

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = -2

Query: 303 TSFSENIIGALKSNGV*VFGDDDIEVNEVKKTDKYLFKKNDYIR*SS*RKYIQ 145
           T+ ++N+   +K NGV + GD+ I+ NEV+   K +F+KN+     S  K I+
Sbjct: 323 TNNTDNVKSDMK-NGVNLSGDNSIKSNEVQSIKKKIFEKNEKYNFKSYLKLIE 374


>UniRef50_A0AMD6 Cluster: Complete genome; n=1; Listeria welshimeri
           serovar 6b str. SLCC5334|Rep: Complete genome - Listeria
           welshimeri serovar 6b (strain ATCC 35897 / DSM 20650
           /SLCC5334)
          Length = 42

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 13/29 (44%), Positives = 23/29 (79%)
 Frame = -3

Query: 257 SKFSVMTILKLMRSRKPTNIFLKKTIIFD 171
           +K S++  +KL++S+K TN+ LK+ II+D
Sbjct: 13  TKRSILPYIKLLKSKKVTNLHLKERIIYD 41


>UniRef50_Q4YRK7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 237

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 461 VTKLTNVSTYKSDAGVETIKLELQENLISWISN 363
           V K+ N +TY+ ++ +E  K +L+ N+I  + N
Sbjct: 96  VNKINNTNTYEDNSSIERTKFDLENNIIKTVDN 128


>UniRef50_O13900 Cluster: Pre-mRNA-splicing factor sap114; n=1;
           Schizosaccharomyces pombe|Rep: Pre-mRNA-splicing factor
           sap114 - Schizosaccharomyces pombe (Fission yeast)
          Length = 481

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 671 SASFAYRNFXAFVSDYRQYQDANIRKA*LPPPNALHPYY 555
           SAS+  RN  AF    RQ + AN + A L   +  HPYY
Sbjct: 48  SASYVARNGPAFEEKIRQNEQANTKFAFLHANDPYHPYY 86


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,494,420
Number of Sequences: 1657284
Number of extensions: 10316859
Number of successful extensions: 19367
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19366
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)