Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0877
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    22   4.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.0  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   5.3  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   9.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.2  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 449  TNVSTYKSDAGVETIKLELQENLISWISNGV 357
            T  +TYK D  +  + + L   +I+W   GV
Sbjct: 1315 TFTTTYKEDVTLPCLAVGLPPPVITWKIKGV 1345


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 641 AFVSDYRQYQDANIRKA*LPPPNALHPYYLWVEIK 537
           A   D R  Q      + +P P  + P Y W+++K
Sbjct: 169 ALQGDGRMRQHVMHNLSSVPQPQPVLPTYKWMQVK 203


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 641 AFVSDYRQYQDANIRKA*LPPPNALHPYYLWVEIK 537
           A   D R  Q      + +P P  + P Y W+++K
Sbjct: 169 ALQGDGRMRQHVMHNLSSVPQPQPVLPTYKWMQVK 203


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 641 AFVSDYRQYQDANIRKA*LPPPNALHPYYLWVEIK 537
           A   D R  Q      + +P P  + P Y W+++K
Sbjct: 169 ALQGDGRMRQHVMHNLSSVPQPQPVLPTYKWMQVK 203


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 69  TPQPDTVRDTLAYIP 25
           TP+PD + + L ++P
Sbjct: 353 TPEPDCIHELLGHMP 367


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 420 RSGNY*TRITRKPYFVDF 367
           RS  Y TR+  +PY   +
Sbjct: 375 RSNKYPTRVPHRPYVAQY 392


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 139 LRIRSAIKMDPY*T 98
           LR+R  IK+DP+ T
Sbjct: 175 LRLREEIKVDPFMT 188


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 429 FICTYVS*FCDISFR*SSILFQLTNSFR*CRHYFTYLN 542
           F C  +   C   F  + ILF +      C +YF Y++
Sbjct: 228 FYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMH 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,101
Number of Sequences: 336
Number of extensions: 2805
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)