Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0877
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    33   0.050
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   7.5  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   7.5  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   9.9  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 32.7 bits (71), Expect = 0.050
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -3

Query: 671 SASFAYRNFXAFVSDYRQYQDANIRKA*LPPPNALHPYY 555
           SAS+  RN  AF    RQ + AN + A L   +  HPYY
Sbjct: 48  SASYVARNGPAFEEKIRQNEQANTKFAFLHANDPYHPYY 86


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 370 IHEIRFSCNSSLIVSTPASDLYVLTLVSFV 459
           I E+ FS  +S IVS  A D+Y+  + SFV
Sbjct: 220 IDELDFSVLNS-IVSLDAKDIYIRVICSFV 248


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 658 HIXTXXHSSQITXNTKMPTFGKLNFLRQM 572
           H+    H + I  N + P FG  N+L Q+
Sbjct: 295 HMRVEPHQTWIELNPRYPVFGGWNYLFQL 323


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -1

Query: 661 LHIXTXXHSSQITXNTKMPTFGKLNFLRQMHFTHIIYGLKL 539
           LHI     +S +   + + TF + NF    H   I+Y L L
Sbjct: 538 LHIHVANPTSTVDIRSPLGTFAERNFQTIYHPNKIVYMLPL 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,450
Number of Sequences: 5004
Number of extensions: 48197
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)