Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0877
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)                    32   0.48 
SB_54590| Best HMM Match : rve (HMM E-Value=4.8e-35)                   29   4.5  
SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              28   7.9  

>SB_58701| Best HMM Match : bZIP_2 (HMM E-Value=1.6)
          Length = 940

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 14/58 (24%), Positives = 33/58 (56%)
 Frame = -3

Query: 458 TKLTNVSTYKSDAGVETIKLELQENLISWISNGVC*INQKRLPYNRLTLTVPRHLVRT 285
           TKL+++ + +SDA + ++ L +Q N +  +S      NQ    ++  +  +P++ +R+
Sbjct: 219 TKLSDLGSIRSDANLHSMDLAIQSNTVDGLSAQASGGNQNSYAFSCFSCEIPQNSLRS 276


>SB_54590| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1309

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -2

Query: 387 KPYFVDFKRCMLNQSKTITV*QINTHCATSFSE---NIIGALKSN-GV*VFGDDDIEVNE 220
           KP  V++ R    + +   + +  T C   FSE    I+  +KS+  + + GD  + +N+
Sbjct: 416 KPRTVEYARRQKVERELDRLLEEGTICPVQFSEWATPIVPIVKSDESIRICGDFKVTLNQ 475

Query: 219 VKKTDKYLFKKND 181
           V K D Y   K +
Sbjct: 476 VSKLDNYPIPKTE 488


>SB_35019| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 412

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 269 SLTESKFSVMTILKLMRSRKPTNIFLKKTIIFDSLV 162
           +L  + F V TI K+ R + PTN+      +FD +V
Sbjct: 50  ALIGNVFVVRTIFKVPRMKTPTNMMFVNMALFDIIV 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,237,394
Number of Sequences: 59808
Number of extensions: 332857
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)