Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0877
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032630-9|CAA21565.1|  369|Caenorhabditis elegans Hypothetical ...    28   5.3  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    28   6.9  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   9.2  
L10990-9|AAB59172.1|  245|Caenorhabditis elegans Rad-51 (fifty o...    27   9.2  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   9.2  

>AL032630-9|CAA21565.1|  369|Caenorhabditis elegans Hypothetical
           protein Y62H9A.9 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 227 LMRSRKPTNIFLKKTIIFDSLVKENTY-KLTSNQEC 123
           L+R+ +PT+I+ KK ++F    +  TY  L  N  C
Sbjct: 149 LVRTNRPTDIYKKKYLLFPVSFRAETYCTLVVNPHC 184


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 297 MTWHSEC*SVIR*SFLIDLTYTV*NPRNKVF 389
           +TW SE  S+I   F ID+ YT   P NK++
Sbjct: 36  ITWKSEF-SLIYTRFAIDIVYTFFVPHNKIY 65


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 624 PXIPRCQHSESLTSSAKCTSPI 559
           P    C  ++S T+SA+CTSP+
Sbjct: 460 PLCQWCHPTQSCTTSARCTSPV 481


>L10990-9|AAB59172.1|  245|Caenorhabditis elegans Rad-51 (fifty one)
           like, shortprotein 1 protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 211 FLDLINFNIVITENLDSV 264
           FLD IN  +VI EN+D++
Sbjct: 126 FLDTINLQLVIVENIDAI 143


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 624 PXIPRCQHSESLTSSAKCTSPI 559
           P    C  ++S T+SA+CTSP+
Sbjct: 462 PLCQWCHPTQSCTTSARCTSPV 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,796,077
Number of Sequences: 27780
Number of extensions: 263661
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)