Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0877
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 488 VSINQFVSIMPSLLYVS*FQPI 553
           V  N+F+SI+P  LY    QP+
Sbjct: 141 VLANEFLSILPIFLYALGEQPL 162


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 488 VSINQFVSIMPSLLYVS*FQPI 553
           V  N+F+SI+P  LY    QP+
Sbjct: 179 VLANEFLSILPIFLYALGEQPL 200


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 69  TPQPDTVRDTLAYIP 25
           TP+PD + + L ++P
Sbjct: 331 TPEPDCIHELLGHMP 345


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -3

Query: 233 LKLMRSRKPTNIFLKKTIIFDSLVKENTYKLTSNQECY*NGSVLNY*NSRKVHPTLHNLT 54
           LK + S  PT    + T   D     NT +L   Q    NG V+++ N    H     L 
Sbjct: 413 LKCVASGNPTP---EITWELDGKRLSNTERLQVGQYVTVNGDVVSHLNISSTHTNDGGLY 469

Query: 53  QCV 45
           +C+
Sbjct: 470 KCI 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,590
Number of Sequences: 438
Number of extensions: 3562
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)