Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0873
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1621 + 34842062-34842066,34842270-34842921                       29   4.5  

>04_04_1621 + 34842062-34842066,34842270-34842921
          Length = 218

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +2

Query: 35  LERKWQKTEIFCLKKKKKTF----PFLHFQAVVNTXFKCYNEQRMCTKLFKLTV---MLY 193
           LER+  K E    KKK+K F    P    + ++   +KC +  R   +L +L V    +Y
Sbjct: 113 LERQKAKAEAAAAKKKRKVFKCRVPNSLVEVMITQPYKCVDHNRSQEELAELAVPHRQIY 172

Query: 194 LARR 205
           + R+
Sbjct: 173 ILRK 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,264,132
Number of Sequences: 37544
Number of extensions: 134198
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)