Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0873
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   2.0  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   2.0  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   2.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.6  

>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 101 LHFQAVVNTXFKCYNEQRMCT 163
           LH   ++N  FKC  ++  CT
Sbjct: 38  LHSDRLLNNYFKCLMDEGRCT 58


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 101 LHFQAVVNTXFKCYNEQRMCT 163
           LH   ++N  FKC  ++  CT
Sbjct: 38  LHSDRLLNNYFKCLMDEGRCT 58


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 101 LHFQAVVNTXFKCYNEQRMCT 163
           LH   ++N  FKC  ++  CT
Sbjct: 38  LHSDRLLNNYFKCLMDEGRCT 58


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 237 MYYE*VQNSNLRLARYNITVSLNNLVHIRC 148
           +Y+    N  LR+   ++T+SL+  V I C
Sbjct: 867 LYFGTGNNVALRITSMSVTISLSASVTIAC 896


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,453
Number of Sequences: 438
Number of extensions: 2203
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)