Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0869
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C5Q2 Cluster: SJCHGC05915 protein; n=1; Schistosoma j...    36   0.69 
UniRef50_A7TEW6 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  

>UniRef50_Q5C5Q2 Cluster: SJCHGC05915 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC05915 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 344

 Score = 36.3 bits (80), Expect = 0.69
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +3

Query: 153 NSSQSHSVQLNCLKGEEQSHXVHKLQSP*KPTENIKIHDHPSMQSF 290
           ++S  HS+ ++ L+    SH V+   SP  P + +K++DHP++  F
Sbjct: 87  STSALHSLDIDWLEAAAHSHSVNSSSSPVYPND-VKVYDHPTLNDF 131


>UniRef50_A7TEW6 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 513

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
 Frame = +2

Query: 155 FISITFRSVELSQGRRTITLXP*TPVPMKTNRKHQNS*SSIYAI--FSKLSFDFLSFGRF 328
           FI    +++E+  G R  T+ P TP    ++ K+ NS SS+  +  FS+ S    S G  
Sbjct: 22  FIENGDKNLEMDTGTRATTV-PNTPT---SDTKNSNSHSSVSPLRSFSRRSGTGSSVGST 77

Query: 329 SFTTLLSMQLLFPFYLS**KHRINDMKS 412
           +  T LS QLL P  L+  +H + D+ S
Sbjct: 78  AGKTNLSPQLLTPVRLNEGEHPLKDIPS 105


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,634,173
Number of Sequences: 1657284
Number of extensions: 10057726
Number of successful extensions: 20975
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20967
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)