Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0869
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    31   0.20 
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    27   1.9  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    27   3.3  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.6  

>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = +2

Query: 131 IHQNMSEKFISITFRSVELSQGRRTITLXP*TPVPMKTNRKHQNS*SSIYAIFSKLSFDF 310
           +H N +EK   +  RS   S GRR++T    +P        +QN   +I+A  S LS D 
Sbjct: 425 LHSNNAEKAAEVPLRSSYYSGGRRSVTSMSDSPYRFSFFSSNQN--ETIHA--SVLS-DL 479

Query: 311 LSFGRFSFTTL 343
           L  G  SF +L
Sbjct: 480 LDDGATSFRSL 490


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 369 KGNRSCIESKVVKENLPKERKSNDSLEK 286
           K   + ++ KV+  N+P ++KS D L++
Sbjct: 10  KAREALVQKKVINSNVPTDKKSIDQLQE 37


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 125 IQIHQNMSEKFISITFRSVELSQGRRTITLXP*TPVPMKTNRK 253
           + IH+ M ++ ISI    ++ +   RT  L    P+  + NRK
Sbjct: 551 VAIHEAMEQQTISIAKAGIQATLNARTSILAAANPIGGRYNRK 593


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 20/92 (21%), Positives = 39/92 (42%)
 Frame = +3

Query: 108 SESV*IFKSIRICRRNSSQSHSVQLNCLKGEEQSHXVHKLQSP*KPTENIKIHDHPSMQS 287
           S +V + K I I ++   ++ +  L  +K     H +  +       + I  H    +  
Sbjct: 116 SVNVNVNKLIPIPKKKVLKNRAKSLLSIKSHVHFHLIPFINFFLLYHQIILSHSLFHISH 175

Query: 288 FLNYHLIFSLLEDFPSLLYFLCNFYSLFICLN 383
            +++H +F     FP L + L   +SLF+  N
Sbjct: 176 LISFHFLFFSFLSFPLLSFILFPCFSLFLSSN 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,020
Number of Sequences: 5004
Number of extensions: 49185
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)