Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0869
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0596 + 25385744-25388890                                         31   1.1  
06_01_0919 - 7090494-7091219,7091630-7091763,7091860-7091927,709...    29   4.5  
01_01_0456 - 3385907-3386174,3386283-3386470,3386542-3387027,338...    28   7.9  

>11_06_0596 + 25385744-25388890
          Length = 1048

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 363 NRSCIESKVVKENLPKERKSNDSLEK 286
           NR+  E K++ ENL  +R SND LEK
Sbjct: 482 NRTADELKILTENLAPDRCSNDPLEK 507


>06_01_0919 -
           7090494-7091219,7091630-7091763,7091860-7091927,
           7092471-7092515,7092620-7092639,7092798-7092860,
           7092946-7093115,7093216-7093252
          Length = 420

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 327 FPSLLYFLCNFYSLFICLNKNTESTI*KAIL 419
           FP+   FL N   +F+C  K+TE +I K+ L
Sbjct: 368 FPTSRSFLLNLPLIFVCKEKDTECSICKSTL 398


>01_01_0456 -
           3385907-3386174,3386283-3386470,3386542-3387027,
           3387123-3387184,3387269-3387429,3388215-3388290,
           3388382-3388471,3388591-3388659,3389498-3389756
          Length = 552

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 568 RNKHFPAVIMCKKPLDTAIIKSILSSTCV 482
           RN++    I+C+K    AI +S+LSST +
Sbjct: 371 RNEYIVRSIICRKEEQQAITRSMLSSTAI 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,305,677
Number of Sequences: 37544
Number of extensions: 245812
Number of successful extensions: 374
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)