Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0869
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical pr...    31   1.00 
AL132904-19|CAD91707.1|  371|Caenorhabditis elegans Hypothetical...    31   1.00 
Z92796-6|CAB63232.1|  405|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    29   4.0  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   9.3  
AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    27   9.3  

>U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical
           protein B0496.5 protein.
          Length = 355

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = +3

Query: 249 ENIKIHDHPSMQSFLNYHLIFSLLEDFPSLLYFLCNFYSLFICLNKNTE 395
           E I I DH    S+  + +IF  L  F  L  F  N YSLF   ++NTE
Sbjct: 251 ELIAIKDHIIRVSYWIFVIIFQPLWHFLILSSFQSNVYSLFNRYSENTE 299


>AL132904-19|CAD91707.1|  371|Caenorhabditis elegans Hypothetical
           protein Y111B2A.26 protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 198 EEQSHXVHKLQSP*KPTENIKIHDHPSMQSFLNY 299
           E+    + +L+SP KPTE+ +I D    Q FL+Y
Sbjct: 207 EDLEVQIEELRSPKKPTESYRIDDSTLRQLFLSY 240


>Z92796-6|CAB63232.1|  405|Caenorhabditis elegans Hypothetical
           protein H25K10.7 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +2

Query: 302 FDFLSFGRFSFTTLLSMQLLFPF--YLS**KHRIND 403
           FDFLS   F+F T+L++ L+ P   +LS  +H + D
Sbjct: 165 FDFLSRPSFAFKTVLTLLLISPIITFLSFGQHTVTD 200


>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 450 F*NVFSMIKFITQVLLNIDFIIAVSKGFLHIITAGKCLFR 569
           F ++FS +  ITQV   + F++AV + F++ I +   LF+
Sbjct: 89  FYSLFSSLCIITQVFHVLLFVLAVERFFIYFIPSSGKLFK 128


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +1

Query: 127  SNPSEYVGEIHLNHIPFS*IVSRAKNNHTXSINSSPHENQQKTSKFMIIHLCNL 288
            S+P ++V  +HL+H+  S   S    N T    S   E   K  KF  +  C L
Sbjct: 1846 SSPEKHVAFLHLHHL-ISDARSTQLTNSTMKQFSEDPERTPKRQKFSYMDYCRL 1898


>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 459 VFSMIKFITQVLLNIDFIIAVSKGFLHIITAGKCLFRN 572
           ++S +  ITQV   + F+++V +G L+   + + LF++
Sbjct: 105 LYSSLNIITQVFHVLLFVLSVERGSLYFFPSSEKLFKS 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,522
Number of Sequences: 27780
Number of extensions: 264616
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)