Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0869
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28070.1 68415.m03408 ABC transporter family protein                29   2.1  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    28   6.5  

>At2g28070.1 68415.m03408 ABC transporter family protein
          Length = 730

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 276 SMQSFLNYHLIFSLLEDFPSLLYFLCNFYSLFICLNKN 389
           S+ S L ++ +  L +DF  L+YF+ NF   F+CL  N
Sbjct: 551 SISSSLVFYFMVGLRDDFSLLMYFVLNF---FMCLLVN 585


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +2

Query: 224 TPVPMKTNRKHQNS*SSIYAIFSKLSFDFLSFGRFSFTTLLSMQLLFPFYLS 379
           TP P KT     +S  SI+   S LSF FL    FS  +L S   L PF  S
Sbjct: 36  TPTPSKTRLSSSSSYRSIHGSKSSLSFLFLIL--FSLRSLYS---LLPFLRS 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,483,930
Number of Sequences: 28952
Number of extensions: 229499
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)