Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0867
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   8.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.0  

>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 336 WHRLEHVRSWVNELDRLKASHLATPRTATGSVPNGNMTSSGTST*Y 473
           W  +E+VR    +     A +   P+T    + NG +  SGTS  Y
Sbjct: 470 WQAVEYVRRTSQDEGIDYALNYTDPKTNDSFILNGLLVPSGTSITY 515


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 360 SWVNELDRLKASHLATPRTATGSVPNGNMTSSGTST 467
           S  N    L  S  +TP + +  VP    TSSG +T
Sbjct: 654 SGFNTTSGLPTSSASTPSSNSSIVPTSTFTSSGFNT 689


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,755
Number of Sequences: 5004
Number of extensions: 42876
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)