Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0867
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0029 - 25194827-25195095,25195129-25197970                       34   0.071
01_07_0316 - 42696640-42697361,42697505-42697733                       32   0.29 
01_07_0317 + 42699035-42699305,42699411-42700132                       28   6.2  
01_07_0315 - 42692539-42693260,42693357-42693609                       28   6.2  

>02_05_0029 - 25194827-25195095,25195129-25197970
          Length = 1036

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 267 TQVSTGQPHEGSGYASQKVLQMAWHRLE-HVRSWVNELDRLKASHLATPRTATGSVPNGN 443
           + +S   P   + +A  KVL ++W++L  ++ +W+  L+ L    L+   T +G +PN  
Sbjct: 452 SHLSGSVPSWVANFAQLKVLDLSWNKLSGNIPAWIGNLEHLFYLDLSN-NTLSGGIPNSL 510

Query: 444 MTSSGTST 467
            +  G  T
Sbjct: 511 TSMKGLLT 518


>01_07_0316 - 42696640-42697361,42697505-42697733
          Length = 316

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 352 CSKRCQAICKTFCEAYPEPSCGCP 281
           C KRC   C   C+ YP  SCG P
Sbjct: 66  CDKRCPNQCMHLCDFYPGVSCGDP 89


>01_07_0317 + 42699035-42699305,42699411-42700132
          Length = 330

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 9/33 (27%)
 Frame = -2

Query: 352 CSKRC--QAI-----CKTFC--EAYPEPSCGCP 281
           C KRC  Q I     CKTFC  + YP  SCG P
Sbjct: 71  CDKRCPNQCIVMCPSCKTFCMCDFYPGVSCGDP 103


>01_07_0315 - 42692539-42693260,42693357-42693609
          Length = 324

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 9/33 (27%)
 Frame = -2

Query: 352 CSKRC--QAI-----CKTFC--EAYPEPSCGCP 281
           C KRC  Q I     CKTFC  + YP  SCG P
Sbjct: 65  CDKRCPNQCIVMCPGCKTFCMCDFYPGVSCGDP 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,245,718
Number of Sequences: 37544
Number of extensions: 264170
Number of successful extensions: 525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)