Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0867
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        30   1.2  
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.8  
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)                       28   4.8  

>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +1

Query: 31  EISKNN*ITIEIMAAPMERIQVLDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQ 210
           E+S+ N    E+  A      + DE+EK++             L K      +AE N  +
Sbjct: 649 ELSEANGKNRELEEACENLAGIRDELEKELAGSKLKIQSLENSLDKANEKTSEAEHNNGR 708

Query: 211 FLRTLSQVESKL 246
             +T+S++E+ L
Sbjct: 709 LRKTISELENNL 720


>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/84 (21%), Positives = 36/84 (42%)
 Frame = +1

Query: 61  EIMAAPMERIQVLDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVES 240
           EI    +   + LD+++KD+ +            SK+  G  Q ++   +    L ++ +
Sbjct: 46  EIEQLKIRHAEELDQLKKDMASVIQASVGNCSTPSKDADGTAQLKARVRELEEELDELNA 105

Query: 241 KLSEQ*IT*LKFQLDNHMKVLDML 312
           K  ++    L+ Q D   K LD +
Sbjct: 106 KYDKE----LRIQRDAQQKELDQI 125


>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 885

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -2

Query: 361 DLTCSKRCQAICKTFCEAYPEPSCGCPVET*VK*FIVHSTLIP--LD*VFLKTVMCLIQL 188
           ++ C +R +  C+     Y + +CG P ET      VH    P  L  + L+ +  +I  
Sbjct: 357 EVLCRRRPRCRCRCLKPHYHQFTCGGPTETSTVKRQVHKAAGPDGLSPMVLRELASVIAP 416

Query: 187 VFDQIFLYSI 158
           V  +IF+ S+
Sbjct: 417 VLQKIFIKSL 426


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,516,128
Number of Sequences: 59808
Number of extensions: 312700
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)