Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0867
         (578 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070377-1|AAH70377.1|  117|Homo sapiens mediator complex subuni...    52   1e-06
D30780-1|BAA06444.1|  411|Homo sapiens phospholipase A2 receptor...    31   3.9  
AC080166-1|AAY24052.1|  968|Homo sapiens unknown protein.              31   3.9  

>BC070377-1|AAH70377.1|  117|Homo sapiens mediator complex subunit
           11 protein.
          Length = 117

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 23/43 (53%), Positives = 33/43 (76%)
 Frame = +3

Query: 255 INYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDR 383
           I YLTQV+TGQPHEGS Y+S+K  QMA  R+++ R  ++++ R
Sbjct: 67  IRYLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVAR 109



 Score = 37.9 bits (84), Expect = 0.026
 Identities = 18/58 (31%), Positives = 33/58 (56%)
 Frame = +1

Query: 82  ERIQVLDEIEKDIITXXXXXXXXXXELSKEKSGQKQAESNTSQFLRTLSQVESKLSEQ 255
           ER++ L++IE++I            ELSKEK+ ++  +   + F  ++  VE++LS Q
Sbjct: 9   ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQ 66


>D30780-1|BAA06444.1|  411|Homo sapiens phospholipase A2 receptor
           protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 254 NKLLDSSFNWTTT*RFWICFTE 319
           N+LL S FNWT   +FWI F +
Sbjct: 188 NELLHSKFNWTEERQFWIGFNK 209


>AC080166-1|AAY24052.1|  968|Homo sapiens unknown protein.
          Length = 968

 Score = 30.7 bits (66), Expect = 3.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 254 NKLLDSSFNWTTT*RFWICFTE 319
           N+LL S FNWT   +FWI F +
Sbjct: 719 NELLHSKFNWTEERQFWIGFNK 740


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,237,615
Number of Sequences: 237096
Number of extensions: 1522191
Number of successful extensions: 2328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2321
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)