BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0867 (578 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical ... 31 0.78 Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical pr... 29 3.2 Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical pr... 28 4.2 Z78410-4|CAB01643.1| 272|Caenorhabditis elegans Hypothetical pr... 27 9.6 U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 27 9.6 U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 27 9.6 U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 27 9.6 AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of... 27 9.6 AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 27 9.6 >AL117193-1|CAB54981.1| 767|Caenorhabditis elegans Hypothetical protein Y105C5A.1 protein. Length = 767 Score = 30.7 bits (66), Expect = 0.78 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = -3 Query: 396 EKLSDDPIRSPMI*HVLNDAKPFAKPSVKHIQNLHVVVQLK 274 E SD P RSP+ V N KP PS K +N + Q+K Sbjct: 193 EASSDAPARSPLKKKVANSVKPVVLPSRKSTRNKKDMNQIK 233 >Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical protein T23F6.1 protein. Length = 160 Score = 28.7 bits (61), Expect = 3.2 Identities = 11/24 (45%), Positives = 12/24 (50%) Frame = -2 Query: 355 TCSKRCQAICKTFCEAYPEPSCGC 284 TC K CQ +C C SCGC Sbjct: 109 TCCKCCQPVCTNACTNGGGCSCGC 132 >Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical protein C15C8.3 protein. Length = 428 Score = 28.3 bits (60), Expect = 4.2 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = -2 Query: 379 SNSFTHDLTCSKRCQAICKTFCEAYPEPSC 290 SN + D+TC+ A C ++C++ P +C Sbjct: 94 SNLWVPDITCAGGKDATCGSYCKSTPYDAC 123 >Z78410-4|CAB01643.1| 272|Caenorhabditis elegans Hypothetical protein C51E3.8 protein. Length = 272 Score = 27.1 bits (57), Expect = 9.6 Identities = 15/59 (25%), Positives = 26/59 (44%) Frame = +2 Query: 299 FWICFTEGFANGLASFRTCQIMGERIGSSESFSFGNSKNSNRKCTKWQYDIIWHQYLIL 475 F+ C +N +AS R C I S ++++G ++S K +H Y I+ Sbjct: 207 FYPCSNSTISNTVASHRGCYFGRGTIQISYNYNYGQFQDSRTLKKKTNNSSAFHTYFIV 265 >U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer formation protein3, isoform c protein. Length = 796 Score = 27.1 bits (57), Expect = 9.6 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = -2 Query: 394 EAFRRSNSFTHDLTCSKRCQAI--CKTFCEAYPE-PSC-GCPV 278 E RR + T D C + CK F EAYPE PS CPV Sbjct: 712 EELRREATRTTDSLAKYCCVRVSFCKGFGEAYPERPSIHDCPV 754 >U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer formation protein3, isoform a protein. Length = 892 Score = 27.1 bits (57), Expect = 9.6 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = -2 Query: 394 EAFRRSNSFTHDLTCSKRCQAI--CKTFCEAYPE-PSC-GCPV 278 E RR + T D C + CK F EAYPE PS CPV Sbjct: 808 EELRREATRTTDSLAKYCCVRVSFCKGFGEAYPERPSIHDCPV 850 >U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer formation protein3, isoform b protein. Length = 864 Score = 27.1 bits (57), Expect = 9.6 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = -2 Query: 394 EAFRRSNSFTHDLTCSKRCQAI--CKTFCEAYPE-PSC-GCPV 278 E RR + T D C + CK F EAYPE PS CPV Sbjct: 780 EELRREATRTTDSLAKYCCVRVSFCKGFGEAYPERPSIHDCPV 822 >AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of constitutive dauerformation protein 2 protein. Length = 1446 Score = 27.1 bits (57), Expect = 9.6 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%) Frame = -2 Query: 352 CSKRCQ--AICKTFCEAYPEPSCGCP 281 C KRC+ +C+ + + E CGCP Sbjct: 845 CRKRCEPPTVCRFRKDYFEEEYCGCP 870 >AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. Length = 796 Score = 27.1 bits (57), Expect = 9.6 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = -2 Query: 394 EAFRRSNSFTHDLTCSKRCQAI--CKTFCEAYPE-PSC-GCPV 278 E RR + T D C + CK F EAYPE PS CPV Sbjct: 712 EELRREATRTTDSLAKYCCVRVSFCKGFGEAYPERPSIHDCPV 754 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,547,611 Number of Sequences: 27780 Number of extensions: 243806 Number of successful extensions: 582 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 548 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 582 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1205362812 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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