Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0867
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    31   0.78 
Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z75527-3|CAA99777.1|  428|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z78410-4|CAB01643.1|  272|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    27   9.6  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    27   9.6  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    27   9.6  
AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    27   9.6  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      27   9.6  

>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 396 EKLSDDPIRSPMI*HVLNDAKPFAKPSVKHIQNLHVVVQLK 274
           E  SD P RSP+   V N  KP   PS K  +N   + Q+K
Sbjct: 193 EASSDAPARSPLKKKVANSVKPVVLPSRKSTRNKKDMNQIK 233


>Z83127-1|CAB05630.1|  160|Caenorhabditis elegans Hypothetical
           protein T23F6.1 protein.
          Length = 160

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 355 TCSKRCQAICKTFCEAYPEPSCGC 284
           TC K CQ +C   C      SCGC
Sbjct: 109 TCCKCCQPVCTNACTNGGGCSCGC 132


>Z75527-3|CAA99777.1|  428|Caenorhabditis elegans Hypothetical
           protein C15C8.3 protein.
          Length = 428

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 379 SNSFTHDLTCSKRCQAICKTFCEAYPEPSC 290
           SN +  D+TC+    A C ++C++ P  +C
Sbjct: 94  SNLWVPDITCAGGKDATCGSYCKSTPYDAC 123


>Z78410-4|CAB01643.1|  272|Caenorhabditis elegans Hypothetical
           protein C51E3.8 protein.
          Length = 272

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +2

Query: 299 FWICFTEGFANGLASFRTCQIMGERIGSSESFSFGNSKNSNRKCTKWQYDIIWHQYLIL 475
           F+ C     +N +AS R C      I  S ++++G  ++S     K      +H Y I+
Sbjct: 207 FYPCSNSTISNTVASHRGCYFGRGTIQISYNYNYGQFQDSRTLKKKTNNSSAFHTYFIV 265


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -2

Query: 394 EAFRRSNSFTHDLTCSKRCQAI--CKTFCEAYPE-PSC-GCPV 278
           E  RR  + T D      C  +  CK F EAYPE PS   CPV
Sbjct: 712 EELRREATRTTDSLAKYCCVRVSFCKGFGEAYPERPSIHDCPV 754


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -2

Query: 394 EAFRRSNSFTHDLTCSKRCQAI--CKTFCEAYPE-PSC-GCPV 278
           E  RR  + T D      C  +  CK F EAYPE PS   CPV
Sbjct: 808 EELRREATRTTDSLAKYCCVRVSFCKGFGEAYPERPSIHDCPV 850


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -2

Query: 394 EAFRRSNSFTHDLTCSKRCQAI--CKTFCEAYPE-PSC-GCPV 278
           E  RR  + T D      C  +  CK F EAYPE PS   CPV
Sbjct: 780 EELRREATRTTDSLAKYCCVRVSFCKGFGEAYPERPSIHDCPV 822


>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -2

Query: 352 CSKRCQ--AICKTFCEAYPEPSCGCP 281
           C KRC+   +C+   + + E  CGCP
Sbjct: 845 CRKRCEPPTVCRFRKDYFEEEYCGCP 870


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -2

Query: 394 EAFRRSNSFTHDLTCSKRCQAI--CKTFCEAYPE-PSC-GCPV 278
           E  RR  + T D      C  +  CK F EAYPE PS   CPV
Sbjct: 712 EELRREATRTTDSLAKYCCVRVSFCKGFGEAYPERPSIHDCPV 754


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,547,611
Number of Sequences: 27780
Number of extensions: 243806
Number of successful extensions: 582
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)