Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0867
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   5.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   8.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   8.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 429 VPNGNMTSSGT 461
           VP GNMT+ GT
Sbjct: 194 VPEGNMTACGT 204


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 429 VPNGNMTSSGT 461
           VP GNMT+ GT
Sbjct: 70  VPEGNMTACGT 80


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 75 CSHDFYCYLIILRYFQ 28
          C  +F CY  + R+FQ
Sbjct: 11 CRRNFSCYYSLKRHFQ 26


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 285 QPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLK 389
           + +EG  YA   V +  +   + + +W+ EL   K
Sbjct: 46  EAYEGIPYALPPVGKFRFKAPQKIPAWIGELSATK 80


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +3

Query: 285 QPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLK 389
           + +EG  YA   V +  +   + + +W+ EL   K
Sbjct: 46  EAYEGIPYALPPVGKFRFKAPQKIPAWIGELSATK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,209
Number of Sequences: 438
Number of extensions: 2755
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)