BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0867 (578 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g25790.1 68416.m03210 myb family transcription factor contain... 27 6.8 >At3g25790.1 68416.m03210 myb family transcription factor contains Pfam domain, PF00249: Myb-like DNA-binding domain Length = 357 Score = 27.5 bits (58), Expect = 6.8 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +3 Query: 276 STGQPHEGSGYASQKVLQMAWHRLEHVRSWVNELDRLKASHLATPR 413 S G G G Q+ + W + H R ++N L +L H+ATP+ Sbjct: 181 SDGGSGGGGGRRGQRKNRRCWSQELH-RRFLNALKQLGGPHVATPK 225 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,764,075 Number of Sequences: 28952 Number of extensions: 222685 Number of successful extensions: 498 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 487 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 498 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1131744440 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -