Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0866
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    29   0.55 
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    28   0.72 
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   3.8  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   3.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   6.7  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   8.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   8.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   8.9  

>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 17/82 (20%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
 Frame = -1

Query: 400 SSNILNNYISLFYSIKEIYLRWRLAFRDRYRLQTQIQCIIN--VFYQ*MLRT---TSSRV 236
           ++  +NN +++F   +++    +    D  RLQ    C+++  +++Q    T     S++
Sbjct: 439 TTTAINNQLNIFRIFEKMIFTLQHFHEDFLRLQNSFNCLLDSGLYHQVFTSTFAQNESKI 498

Query: 235 MAVC-GNSLGVHSVLHLRKDVL 173
           M++  G+   + S+LH + D +
Sbjct: 499 MSMASGHFYNIDSLLHQQNDAV 520


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 460 NILFVSNDELIQGKIDSWKCSSNI----LNNYISLFYSIKEIY 344
           NIL +S+D + QG   SW+  +      L     LFY +K+I+
Sbjct: 394 NILKISSDIVTQGSESSWRAKAETSEMQLKEAKRLFYELKQIH 436


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 248 GGPQHLLIEHVDYALDLGLQSIPIA 322
           GG    +++H+DY  DLG  +I I+
Sbjct: 61  GGNWQGIVDHLDYIRDLGFTAISIS 85


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 350 FFDTVKQAN-VIVENVRGTFPGVDFTLYKLIVRNKQNV 460
           F D + QA+   V++ R  FP VDF    L++ N+QN+
Sbjct: 237 FVDVMSQASGTEVDSER--FPSVDFEDPSLLMENQQNI 272


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
            Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -1

Query: 463  VNILFVSNDELI--QGKIDSWKCSSNILNNYISLFYSI 356
            +N +  SN  L+   GK+  +  +  +L N  SLFYS+
Sbjct: 1419 INTVMDSNRILVLDHGKVVEFDSTKKLLENKASLFYSL 1456


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 387 RMFEEHFQESILPCISSSFETNRMFTQEDRYNG-PNXRANL 506
           RM+ E +   +L  +  S +TN  F    R+N  PN  A L
Sbjct: 170 RMWTEAYMSEVLRSLLYSDDTNSRFAGHRRFNPIPNPDAEL 210


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 69  AVIGTRANINIAQIENYGGETFLSEQL 149
           A+I  R   N+A I+ YG E++LS  L
Sbjct: 365 AIIKQRQQ-NVASIQRYGNESYLSNFL 390


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 212 Q*IAAHSHDSTGGGPQHLLIEHVDYALDLGLQSIPIAEGKSPPQIYFFDTVKQANVIVEN 391
           Q ++  S D     P+ L+ E  + A     Q + ++EGK  P   F  + K  N+I + 
Sbjct: 776 QGVSFKSVDKKSTTPKFLISELRNLAQQ---QKVELSEGKVTPSHQFLFSYKDPNIITDI 832

Query: 392 VR 397
            R
Sbjct: 833 AR 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,717
Number of Sequences: 5004
Number of extensions: 45125
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)