Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0866
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1271 + 35890317-35890762,35891113-35891173,35891669-358918...    33   0.10 
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249...    33   0.14 
04_03_0821 - 20030123-20030250,20030551-20030815,20030912-20032081     29   2.9  
10_08_1015 - 22255135-22255693,22256437-22256836,22257938-222583...    28   5.1  
06_01_0968 + 7470284-7470427,7471555-7471821,7472145-7472537           28   5.1  
10_08_0935 + 21670372-21671396,21672057-21672987                       27   8.9  
09_02_0122 + 4523782-4523935,4524483-4524535                           27   8.9  
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476...    27   8.9  

>01_06_1271 +
           35890317-35890762,35891113-35891173,35891669-35891813,
           35891903-35891982,35892465-35892548,35892644-35892718,
           35893150-35893242,35893315-35893503
          Length = 390

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = -3

Query: 263 NVADHLQ*SHGCVRQFIGRTQRFTSKERRFSIVEHFLN*LFTEKRFSAIIL 111
           NVA HL+   GC  + +GR  RF S + + + V   LN L   KR  A  L
Sbjct: 140 NVAHHLRNPSGCSVEILGRRDRFVSCDAQVTNVMGTLNMLGLAKRIGARFL 190


>02_05_0430 -
           28923784-28923830,28923931-28924341,28924552-28924963,
           28925000-28925542,28925790-28925884,28926003-28927033,
           28927304-28927452,28927483-28927523,28927594-28928206
          Length = 1113

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 311 IPIAEGKSPPQIYFFDTVKQANVIVENVRGTFPGVDFTLYKLIVR-NKQNVYTR 469
           +P ++G    Q+YF+DT + AN +   VR + P +D  L ++I+R   QN Y +
Sbjct: 428 VPGSQGPCHMQLYFYDT-EDANALAHRVRRS-PDLDINLVRVILRILVQNPYVQ 479


>04_03_0821 - 20030123-20030250,20030551-20030815,20030912-20032081
          Length = 520

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 147 LVQKMLNDAKTSFLRCKTLCTPNEL---PHT 230
           L QK LNDA    LR + LC+P  +   PHT
Sbjct: 388 LKQKKLNDALMGILRVRNLCSPPYVYTNPHT 418


>10_08_1015 -
           22255135-22255693,22256437-22256836,22257938-22258371,
           22259586-22259977
          Length = 594

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 242 TGGGPQHLLIEHVDYALDLGLQSIPIAEGKSPPQIY-FFDTVKQANVIVENVRGTFPGV 415
           T GG   L++ H    + + LQS P      PP+     D VKQ  +  E  RG + G+
Sbjct: 290 TVGGAAQLVVGHPFDTIKVKLQSQPTPPPGQPPKFAGAMDAVKQ-TLAAEGPRGLYKGM 347


>06_01_0968 + 7470284-7470427,7471555-7471821,7472145-7472537
          Length = 267

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 387 RMFEEHFQESILPCISSSFETN 452
           R+F  HF ESI+P + S F +N
Sbjct: 214 RLFATHFGESIMPLLFSRFASN 235


>10_08_0935 + 21670372-21671396,21672057-21672987
          Length = 651

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/61 (31%), Positives = 25/61 (40%)
 Frame = -2

Query: 417 STPGNVPRTFSTITLACFTVSKKYI*GGDLPSAIGIDCRPKSNA*STCSISKCCGPPPVE 238
           STP  VPR    + +A    +         P    ++    SN  ST S  +  GPP VE
Sbjct: 584 STPPGVPRAVEPVAVAAAVPATVM---SKPPPVDTVEMAIHSNCNSTNSSKRMAGPPEVE 640

Query: 237 S 235
           S
Sbjct: 641 S 641


>09_02_0122 + 4523782-4523935,4524483-4524535
          Length = 68

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 300 PKSNA*STCSISKCCGPPPVESW 232
           P++    TC+ S C G PP  SW
Sbjct: 21  PQARVRRTCAGSSCDGGPPTASW 43


>02_03_0026 -
           14045653-14045874,14047023-14047215,14047518-14047618,
           14050145-14050272,14050409-14050502,14050749-14051237,
           14052622-14052915,14053602-14053732,14053829-14055440,
           14055539-14055651,14055902-14056933,14057023-14057145,
           14057250-14057688
          Length = 1656

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +2

Query: 275 HVDYALDLGLQS-IPIAEGKSPPQIYFFDTVKQANVIVENVRGTFPGVDFTLYKLIV 442
           HV  AL   L++ +P ++G    Q+YF+DT + A+ +   V  + P +D  L ++I+
Sbjct: 335 HVHGALYHRLENLVPGSQGPRHMQLYFYDT-EDADALAHRVWRS-PDLDINLVRVIL 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,704,927
Number of Sequences: 37544
Number of extensions: 294472
Number of successful extensions: 696
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)