Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0866
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14629| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   4.0  
SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)             28   4.0  
SB_9929| Best HMM Match : MTS (HMM E-Value=3.5)                        28   5.3  
SB_33147| Best HMM Match : MNNL (HMM E-Value=0.35)                     28   5.3  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  
SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9)                    27   9.2  

>SB_14629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 311 IPIAEGKSPPQIYFFDTVKQANVI 382
           +P A+ +SP +  FFD V QAN I
Sbjct: 11  LPPADPRSPVETVFFDVVDQANAI 34


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 90  NINIAQIENYGGETFLSEQLVQKMLNDAKTSFLRCKTLCTPNELPHTAMTL 242
           N     +   G    L +Q+V  +L D   ++LRCK  C     P + ++L
Sbjct: 460 NYEFVIVVRKGNRESLGQQVVSIILGDPLVTYLRCKFNCGGKVNPSSKLSL 510


>SB_31467| Best HMM Match : CTP_transf_2 (HMM E-Value=0.85)
          Length = 1459

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 236  DSTGGGPQHLLIEHVDYALDLGLQSIPIAEGKSPPQIYFFDTVKQANVIVE 388
            D    GP+ +  +HVD   + GL+++ +A+    P+ Y     K A V  E
Sbjct: 1036 DRLESGPKDVTADHVDGYAEQGLRTLAVAQRVFTPEEYRDVDAKLAEVFEE 1086


>SB_9929| Best HMM Match : MTS (HMM E-Value=3.5)
          Length = 573

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 111 QSGLCLYWRGFRLQPANRVSVLGNRHLVSAS 19
           QS   +Y RGF L P + VSV     +VSAS
Sbjct: 298 QSLFGIYSRGFSLPPTHSVSVCYTHSIVSAS 328


>SB_33147| Best HMM Match : MNNL (HMM E-Value=0.35)
          Length = 232

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -2

Query: 432 LYKVKSTPGNVPRTFSTITLACFTVSKKYI*GGDLPSAIGIDCRPKSNA*STCSISKCCG 253
           LY++KS   +V R F  + LAC  V    + G +    + +     SN  +      CC 
Sbjct: 113 LYRIKSASSSVTRHFLVLPLACMLV----LPGNEAAVIVSVRLMTYSNPQNLDINGACCD 168

Query: 252 P 250
           P
Sbjct: 169 P 169


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 418  IDSWKCSSNILNNYISLFYSIKEIYLRWRLAF-RDRYRLQTQIQ 290
            +++WK  +   N +  ++    E   RWRLAF  +R R++  ++
Sbjct: 1205 VNAWKIYNETKNKWYVVYTKTAEQKERWRLAFTEERRRVKQDVE 1248


>SB_56338| Best HMM Match : DUF970 (HMM E-Value=1.9)
          Length = 554

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +3

Query: 39  GFQELRRDLQAVIGTRANINIAQIENYGG 125
           G  ++   +QA++ TRA +N++++++Y G
Sbjct: 145 GIHQVEDKVQALLETRAPVNVSELKSYLG 173


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,867,907
Number of Sequences: 59808
Number of extensions: 346982
Number of successful extensions: 769
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)