Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0866
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-4|AAA82266.1|  659|Caenorhabditis elegans Hypothetical pr...    62   2e-10
Z75529-6|CAA99785.1|  269|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z75529-7|CAE54888.1|  382|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC006663-2|AAF39900.2|  603|Caenorhabditis elegans Hypothetical ...    27   6.0  

>U41007-4|AAA82266.1|  659|Caenorhabditis elegans Hypothetical
           protein C33H5.9 protein.
          Length = 659

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 49/84 (58%)
 Frame = +3

Query: 3   AREHVKKQIQGGGFQELRRDLQAVIGTRANINIAQIENYGGETFLSEQLVQKMLNDAKTS 182
           +++HVKKQI GGG  EL+RD+ A         +  +E YGGETF++E +   +L + K +
Sbjct: 330 SKKHVKKQI-GGGLHELKRDVAA--------RLMNVETYGGETFVAEDVAISILQETKNA 380

Query: 183 FLRCKTLCTPNELPHTAMTLLEVV 254
           F R   LC   ELP     +++V+
Sbjct: 381 FGRANQLCDKEELPRHVENIVDVL 404



 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 27/87 (31%), Positives = 44/87 (50%)
 Frame = +2

Query: 257 QHLLIEHVDYALDLGLQSIPIAEGKSPPQIYFFDTVKQANVIVENVRGTFPGVDFTLYKL 436
           ++L  EH+DYA++ GL  I +AE K+ P  YFF  V +   ++  +   F    F + K 
Sbjct: 406 KYLYGEHLDYAVETGLAGISLAESKTEPPAYFFSVVAKCTSVILLMIKQFEDPIFPIIKE 465

Query: 437 IVRNKQNVYTRRPL*WTKLESKLDLAL 517
            +  + +V  +       LESK+ L L
Sbjct: 466 TI-VEPSVAKKWQQSLRSLESKMSLGL 491


>Z75529-6|CAA99785.1|  269|Caenorhabditis elegans Hypothetical
           protein C44H9.7a protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
 Frame = -1

Query: 409 WKCSSNILNNYISLF------YSIKEIYLRW 335
           WKC SN+L+NY S        Y +K  Y +W
Sbjct: 233 WKCGSNLLDNYASQVILGTKCYWLKGCYQQW 263


>Z75529-7|CAE54888.1|  382|Caenorhabditis elegans Hypothetical
           protein C44H9.7b protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 409 WKCSSNILNNYIS 371
           WKC SN+L+NY S
Sbjct: 233 WKCGSNLLDNYAS 245


>AC006663-2|AAF39900.2|  603|Caenorhabditis elegans Hypothetical
           protein H24K24.4 protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +3

Query: 6   REHVKKQIQGGGFQELRRDLQAVIGTRANINIAQIENYGGETFLSEQLVQKMLN 167
           R H+K      GF++ ++ L+ ++G   +  +  + +Y   TF + +  QK +N
Sbjct: 28  RIHIKNIPTFIGFKQFKKVLEKILGDVKSKKVRHMSDYAYVTFETPEDAQKAIN 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,514,172
Number of Sequences: 27780
Number of extensions: 259765
Number of successful extensions: 651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)