Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0866
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28890.1 68416.m03606 leucine-rich repeat family protein cont...    31   0.61 
At4g32820.1 68417.m04668 expressed protein ; expression supporte...    30   0.80 
At1g74930.1 68414.m08693 AP2 domain-containing transcription fac...    29   1.9  
At4g00450.1 68417.m00062 expressed protein                             28   3.2  
At3g20370.1 68416.m02581 meprin and TRAF homology domain-contain...    28   3.2  
At5g27060.1 68418.m03229 disease resistance family protein conta...    27   5.7  
At4g03140.1 68417.m00427 short-chain dehydrogenase/reductase (SD...    27   5.7  
At5g44470.1 68418.m05449 hypothetical protein                          27   9.9  
At3g26760.1 68416.m03347 short-chain dehydrogenase/reductase (SD...    27   9.9  
At3g11010.1 68416.m01329 disease resistance family protein / LRR...    27   9.9  
At2g01580.1 68415.m00082 expressed protein  and genefinder             27   9.9  

>At3g28890.1 68416.m03606 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 711

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +2

Query: 242 TGGGPQHLLIEHVDYALDLGLQSIPIAEGKSPPQIYFFDTVKQANVIVENVRGTFP 409
           +GG P+H+    +  +LD+G   +    GK P  + FF T++  NV    +  TFP
Sbjct: 374 SGGLPKHIF--EILRSLDVGHNQLV---GKLPRSLRFFSTLEVLNVESNRINDTFP 424


>At4g32820.1 68417.m04668 expressed protein ; expression supported by
            MPSS
          Length = 1817

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 19/71 (26%), Positives = 35/71 (49%)
 Frame = -3

Query: 299  PNPMHNQRVLSVNVADHLQ*SHGCVRQFIGRTQRFTSKERRFSIVEHFLN*LFTEKRFSA 120
            P    N++ L VN+ +  +    C+R+++    R   +    + +E   N L ++KRFS 
Sbjct: 1407 PGLAGNKKALEVNLPESSRKFITCIRKYLLFYLRLLEETEDVNTLERAFNSLRSDKRFSL 1466

Query: 119  IILNLGYVYIG 87
             + +L  V IG
Sbjct: 1467 CVEDLVPVAIG 1477


>At1g74930.1 68414.m08693 AP2 domain-containing transcription
           factor, putative similar to AP2 domain containing
           protein RAP2.1 GI:2281627 from [Arabidopsis thaliana]
          Length = 195

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +3

Query: 39  GFQELRRDLQAVIGTRANINIAQIENYGGETFLSEQLV 152
           GF     D     G      I  IE+YGGE+ L E L+
Sbjct: 154 GFDSFSDDFSGFSGGDRFTEILPIEDYGGESLLDESLI 191


>At4g00450.1 68417.m00062 expressed protein
          Length = 2124

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 186  LRCKTLCTPNELPHTAMTLLE 248
            LRC   C P+ +P TA+TL++
Sbjct: 2000 LRCSLSCQPHSVPPTALTLVQ 2020


>At3g20370.1 68416.m02581 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 379

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = -3

Query: 188 KERRFSIVEHFLN*LF--TEKRFSAIILN--LGYVYIGAGSDYSLQIASQFLETA----- 36
           K   FS+ E+FLN  F  T + FS ++ N  L  V+   G  +++QI    L T      
Sbjct: 226 KSELFSVTENFLNPRFTWTIRGFSTLLKNSYLSEVFSIGGRSWNIQINPSGLGTGEGKAL 285

Query: 35  TLYLLLNV 12
           ++YL LNV
Sbjct: 286 SMYLGLNV 293


>At5g27060.1 68418.m03229 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 957

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 242 TGGGPQHLLIEHVDYALDLGLQSIPIAEGKSPPQIYFFDTVKQANVIVENVRGTFP 409
           +GG P+ +    +  +LD+G   +    GK P  + FF T++  NV    +  TFP
Sbjct: 619 SGGLPKQIF--EILRSLDVGHNQLV---GKLPRSLSFFSTLEVLNVESNRINDTFP 669


>At4g03140.1 68417.m00427 short-chain dehydrogenase/reductase (SDR)
           family protein similar to stem secoisolariciresinol
           dehydrogenase GI:13752458 from {Forsythia x intermedia};
           similar to sex determination protein tasselseed 2
           SP:P50160 from [Zea mays]
          Length = 279

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 329 KSPPQIYFFDTVKQANVIVENVRGTFPGVDFTLYKLIVRNKQNV 460
           K+PP I   D      VI  NVRG   G+      +I RN  ++
Sbjct: 103 KTPPSIVDLDLNVFDKVINTNVRGVMAGIKHAARVMIPRNSGSI 146


>At5g44470.1 68418.m05449 hypothetical protein
          Length = 108

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -2

Query: 336 GDLPSAIGIDCRPKSNA*STCSISKCCGPPPVESWLCAAIHWA 208
           G   S +G   R        C +SK  G  PVE   C A+ WA
Sbjct: 28  GTSGSGLGWIIRNSHGTFMECGMSKFQGRAPVEESECTALIWA 70


>At3g26760.1 68416.m03347 short-chain dehydrogenase/reductase (SDR)
           family protein similar to sex determination protein
           tasselseed 2 SP:P50160 from [Zea mays]
          Length = 300

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 290 LDLGLQSIPIAEGKSPPQIYFFDTVKQANVIVENVRGTFPGV 415
           LD+ L S  I+   SPP I   D      V+  NVRGT  G+
Sbjct: 113 LDVMLNSAGISCSISPPSIADLDMDTYDKVMRLNVRGTVLGI 154


>At3g11010.1 68416.m01329 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to disease
           resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 894

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +2

Query: 242 TGGGPQHLLIEHVDYALDLGLQSIPIAEGKSPPQIYFFDTVKQANVIVENVRGTFPGVDF 421
           +GG P+H+  E +  +LD+G   +    GK P  + FF  ++  NV    +   FP    
Sbjct: 557 SGGFPEHIF-ESLR-SLDVGHNQLV---GKLPRSLRFFSNLEVLNVESNRINDMFPFWLS 611

Query: 422 TLYKLIV 442
           +L KL V
Sbjct: 612 SLQKLQV 618


>At2g01580.1 68415.m00082 expressed protein  and genefinder
          Length = 191

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 226 CGNSLGVHSVLHLRKDVLASLSIF 155
           CGN+L +H+VL L   V ++LS++
Sbjct: 158 CGNALAIHTVLVLVVLVSSALSVY 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,088
Number of Sequences: 28952
Number of extensions: 237697
Number of successful extensions: 589
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)