Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0864
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391...    44   5e-05
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734...    44   1e-04
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911     38   0.006
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553...    27   8.8  

>07_03_1305 -
           25638531-25638584,25638909-25638990,25639087-25639169,
           25639252-25639515,25639984-25640060,25640183-25640277,
           25640953-25641065
          Length = 255

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -1

Query: 412 AKYSRDXXETICPNYWISHWDEQREKGIFPGPI 314
           AKY R    ++CP+ WI  W+EQRE G FPGP+
Sbjct: 227 AKYYR----SLCPSEWIERWNEQRENGTFPGPL 255


>03_03_0210 +
           15470680-15470715,15473088-15473342,15473417-15473499,
           15473617-15473698,15474886-15474939
          Length = 169

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = -1

Query: 412 AKYSRDXXETICPNYWISHWDEQREKGIFPGPI 314
           AKY R    ++CP  W+  W+EQRE G FPGP+
Sbjct: 141 AKYYR----SLCPGEWVERWNEQRENGTFPGPL 169


>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
          Length = 51

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 409 KYSRDXXETICPNYWISHWDEQREKGIFPGPI 314
           KY++    ++CP  WI  W EQR  G F GP+
Sbjct: 21  KYAK-CYRSLCPGEWIERWKEQRANGTFAGPL 51


>01_07_0095 +
           41053562-41053603,41054609-41054846,41055064-41055312,
           41055419-41055469,41056044-41056256,41056305-41056367,
           41056422-41056474,41056953-41057067,41057150-41057404,
           41057531-41058618
          Length = 788

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 135 LRATSNTSIIKKTAIDIYLSYLVRICR 55
           ++A  N+S  K+ AID+  S+L + CR
Sbjct: 740 IKARKNSSFFKRFAIDVGYSFLRKNCR 766


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,288,401
Number of Sequences: 37544
Number of extensions: 176949
Number of successful extensions: 275
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)