Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0864
         (514 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2928|AAN09514.1|   77|Drosophila melanogaster CG14235-P...    48   6e-06
AE014298-2927|AAN09513.1|   77|Drosophila melanogaster CG14235-P...    48   6e-06
AE014298-2926|AAF49015.2|   96|Drosophila melanogaster CG14235-P...    48   6e-06

>AE014298-2928|AAN09514.1|   77|Drosophila melanogaster CG14235-PC,
           isoform C protein.
          Length = 77

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 454 FHXCTSLXRRKLMIAKYSRDXXETICPNYWISHWDEQREKGIFPGPI 314
           FH C            Y +   +++CPN W+  WD+QRE G FPG I
Sbjct: 31  FHRCQKKRGEDFAPCNYFQKVYKSMCPNAWVEKWDDQRESGTFPGRI 77


>AE014298-2927|AAN09513.1|   77|Drosophila melanogaster CG14235-PB,
           isoform B protein.
          Length = 77

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 454 FHXCTSLXRRKLMIAKYSRDXXETICPNYWISHWDEQREKGIFPGPI 314
           FH C            Y +   +++CPN W+  WD+QRE G FPG I
Sbjct: 31  FHRCQKKRGEDFAPCNYFQKVYKSMCPNAWVEKWDDQRESGTFPGRI 77


>AE014298-2926|AAF49015.2|   96|Drosophila melanogaster CG14235-PA,
           isoform A protein.
          Length = 96

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 454 FHXCTSLXRRKLMIAKYSRDXXETICPNYWISHWDEQREKGIFPGPI 314
           FH C            Y +   +++CPN W+  WD+QRE G FPG I
Sbjct: 50  FHRCQKKRGEDFAPCNYFQKVYKSMCPNAWVEKWDDQRESGTFPGRI 96


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,761
Number of Sequences: 53049
Number of extensions: 295483
Number of successful extensions: 604
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1867000320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)