Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0864
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putati...    46   1e-05
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati...    43   1e-04
At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putati...    42   2e-04
At3g01345.1 68416.m00053 Expressed protein                             30   1.1  
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains...    28   3.2  
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    27   5.6  
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    27   5.6  
At1g60160.1 68414.m06777 potassium transporter family protein si...    27   9.8  

>At5g57815.1 68418.m07230 cytochrome c oxidase subunit 6b, putative
           similar to subunit 6b of cytochrome c oxidase
           [Arabidopsis thaliana] gi|6518353|dbj|BAA87883
          Length = 78

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 454 FHXCTSLXRRKLMIAKYSRDXXETICPNYWISHWDEQREKGIFPGPI 314
           FH CT+    +    +        +CP  W+  W+EQRE G FPGP+
Sbjct: 32  FHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWNEQRESGTFPGPL 78


>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
           (COX6b) nearly identical to subunit 6b of cytochrome c
           oxidase [Arabidopsis thaliana] GI:6518353
          Length = 191

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = -1

Query: 385 TICPNYWISHWDEQREKGIFPGPI 314
           ++CP+ W+  W+EQRE G FPGP+
Sbjct: 167 SLCPSEWVDRWNEQRENGTFPGPL 190


>At4g28060.1 68417.m04025 cytochrome c oxidase subunit 6b, putative
           similar to subunit 6b of cytochrome c oxidase
           [Arabidopsis thaliana] gi|6518353|dbj|BAA87883
          Length = 164

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = -1

Query: 412 AKYSRDXXETICPNYWISHWDEQREKGIFPGPI 314
           AKY R     +CP  W+  W+EQRE G FPGP+
Sbjct: 136 AKYYR----ALCPGEWVDKWNEQRETGTFPGPL 164


>At3g01345.1 68416.m00053 Expressed protein
          Length = 466

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 173 FARPAYPGETXKASGPPVILQS*KKLLSTFTC 78
           FA+PA+  E+ KAS    I++   KLLS F+C
Sbjct: 420 FAKPAFMVESAKASTDFSIIRKLMKLLSLFSC 451


>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 451

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -2

Query: 231 SSFXGARAAVSKFHPFXXSLCSSGLSW*NXKGLRATSNTSIIKKTAIDIYL 79
           S+   A A + K++ +   L S G +W   K L AT+N SII    ID  L
Sbjct: 250 STMIAAMANLMKYNIYDLELTSIGNNWELKKLLIATTNKSIIVIEDIDCSL 300


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 87  IYLSYLVRICRHRH 46
           IY  Y+++ICRH+H
Sbjct: 280 IYFPYVIKICRHQH 293


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 87  IYLSYLVRICRHRH 46
           IY  Y+++ICRH+H
Sbjct: 280 IYFPYVIKICRHQH 293


>At1g60160.1 68414.m06777 potassium transporter family protein
           similar to potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 827

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 165 SGLSW*NXKG-LRATSNTSIIKKTAIDIYLSYLVRICR 55
           SGL++    G +RA  N+  +KK  I+ + ++L R CR
Sbjct: 768 SGLTYLLAHGDVRAKKNSIFVKKLVINYFYAFLRRNCR 805


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,948,990
Number of Sequences: 28952
Number of extensions: 141588
Number of successful extensions: 262
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)