Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0859
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   2.8  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.6  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   8.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   8.6  

>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 351 IKNRMSERRLDIFDEKLHPLSK 416
           ++ R+   R+D+ DE LHP S+
Sbjct: 256 LEQRLKRHRIDVSDEDLHPSSQ 277


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 417 LCSKDEVSHQKYLTCAQTFYSLCDSK*QVLHTSQ 316
           +C K + + +K   CAQ F + C+    VL T Q
Sbjct: 201 ICEKSDKAIEKTFLCAQLFKTFCED--GVLQTFQ 232


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 541 SXYFYKXDLSLNFWWXWK 594
           S +FYK  L L + W W+
Sbjct: 151 SGFFYKHPLLLKYQWYWR 168


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 66  WKIVFQLYYIFANGRWTPIAA 4
           WK +FQ   +F+   WT +AA
Sbjct: 261 WKTLFQFLLLFSAYAWTVLAA 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,814
Number of Sequences: 5004
Number of extensions: 43217
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)