Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0859
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0067 - 25314741-25315410,25315498-25315892                       30   1.7  

>05_06_0067 - 25314741-25315410,25315498-25315892
          Length = 354

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +1

Query: 79  SSNNIQHISEREPDDGD---IDPSQDPMAGTIFMERSKASIENGMTRKRSQHQIADNKLK 249
           S++ +Q     + D GD   +    DP +  + +  S   + NG  R   +H++  NKLK
Sbjct: 220 STSGLQVALHHDADAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRS-VRHRVVANKLK 278

Query: 250 KRVPVLQF 273
            RV ++ F
Sbjct: 279 SRVSMIYF 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,527,096
Number of Sequences: 37544
Number of extensions: 256537
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)