Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0859
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    31   0.56 
SB_33245| Best HMM Match : Sterile (HMM E-Value=4.5)                   29   2.2  
SB_27376| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-05)        29   3.0  
SB_286| Best HMM Match : M (HMM E-Value=0.39)                          29   3.0  
SB_27377| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-22)        28   6.9  
SB_55552| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  

>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +1

Query: 61  LPEGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIENGMT 207
           +PE +++   + +I+ ++PDDGD+  + D M    F  R K  I  G T
Sbjct: 603 VPENKLAGYPVAYINVKDPDDGDV-TTCDVMTDEFFGIRDKELIVTGNT 650


>SB_33245| Best HMM Match : Sterile (HMM E-Value=4.5)
          Length = 244

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = +1

Query: 43  VKLEDYLPEGEVSSNNIQ--HISEREPDDGDIDPSQDPMAG-----TIFMERSKASIENG 201
           V+ + Y      +++N+   H+ E EPDDG ID +     G     T   E S+ ++E G
Sbjct: 60  VETDKYFRSESKNNSNLAETHLKENEPDDGGIDETHRAWEGERDNETKTREGSEGNMEKG 119

Query: 202 MTRKRSQHQIA 234
            T     + +A
Sbjct: 120 GTAVDLHYMVA 130


>SB_27376| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-05)
          Length = 181

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 109 REPDDGDIDPSQDPMAGTIFMERSKASIENGMTRKRSQHQI 231
           ++P+ GD+ P   P    +FM   K +  N MT K    ++
Sbjct: 113 QQPNYGDVKPPNTPGPAKVFMREKKFTENNPMTYKEISEKL 153


>SB_286| Best HMM Match : M (HMM E-Value=0.39)
          Length = 414

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = +1

Query: 64  PEGEVSSNNIQHISEREPDDGDIDPS---QDPMAGTIFMERSKASIENG-MTRKRSQHQI 231
           P+G       +  ++RE   G        ++P  GT+  ERSK + +NG + R+RS+   
Sbjct: 224 PKGNAQRERSKGNTQRERSKGSAHKGTLKREPSKGTLKRERSKGNAQNGTLKRERSKGNA 283

Query: 232 ADNKLKKRVPVLQFT 276
               L+    VL  T
Sbjct: 284 QKETLQGNKFVLFIT 298


>SB_27377| Best HMM Match : Neur_chan_memb (HMM E-Value=1.6e-22)
          Length = 200

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 112 EPDDGDIDPSQDPMAGTIFMERSKASIENGMTRKRSQHQI 231
           +P+ GD+ P   P    +FM   K +  N MT K    ++
Sbjct: 135 QPNYGDVKPPNTPGPTKVFMREKKFTENNPMTYKEISEKL 174


>SB_55552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 136 PSQDPMA-GTIFMERSKASIENGMTRKRSQHQIADNKLKKRVPVL 267
           P  DP+A G    E S  +IENGMT      Q+   +   ++P++
Sbjct: 29  PFSDPLADGPTIQESSTIAIENGMTTALLFEQLKGIRETVKIPLI 73


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/75 (22%), Positives = 37/75 (49%)
 Frame = +1

Query: 31   RKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIENGMTR 210
            ++DI ++ED L   E S   I  I + +    ++  + +    ++  + S+ +  + +T+
Sbjct: 981  KQDISRVEDKL---EASQKKISQIQQEKQQTEEMLHTANSTIDSLNEQLSQMTRADALTK 1037

Query: 211  KRSQHQIADNKLKKR 255
             R QH+   N  +KR
Sbjct: 1038 AREQHESILNAARKR 1052


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,925,782
Number of Sequences: 59808
Number of extensions: 310776
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)