Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0859
(613 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY069580-1|AAL39725.1| 406|Drosophila melanogaster LD31675p pro... 117 1e-26
AE014134-2099|AAF53122.1| 406|Drosophila melanogaster CG14939-P... 117 1e-26
Y17111-1|CAA76635.1| 1365|Drosophila melanogaster Nup154 protein. 32 0.70
AF160944-1|AAD46884.1| 1365|Drosophila melanogaster Nup154 protein. 32 0.70
AF051398-1|AAC05386.1| 1365|Drosophila melanogaster nucleoporin ... 32 0.70
AF051397-1|AAC05385.1| 1349|Drosophila melanogaster nucleoporin ... 32 0.70
AF051396-2|AAC06248.1| 1349|Drosophila melanogaster nucleoporin ... 32 0.70
AF051396-1|AAC06247.1| 1365|Drosophila melanogaster nucleoporin ... 32 0.70
AE014134-2012|AAF53050.2| 1123|Drosophila melanogaster CG4579-PB... 32 0.70
AE014134-2011|AAF53051.1| 1365|Drosophila melanogaster CG4579-PA... 32 0.70
DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein. 31 1.2
AE014298-1758|AAN09642.1| 330|Drosophila melanogaster CG32655-P... 30 2.8
BT003751-1|AAO41415.1| 286|Drosophila melanogaster RH56454p pro... 29 6.5
AY060677-1|AAL28225.1| 626|Drosophila melanogaster GH11117p pro... 29 6.5
AE014297-4807|AAF57196.2| 626|Drosophila melanogaster CG1937-PA... 29 6.5
AY119044-1|AAM50904.1| 149|Drosophila melanogaster LP06572p pro... 28 8.6
AE014297-4417|AAF56921.1| 149|Drosophila melanogaster CG7592-PA... 28 8.6
>AY069580-1|AAL39725.1| 406|Drosophila melanogaster LD31675p
protein.
Length = 406
Score = 117 bits (281), Expect = 1e-26
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +3
Query: 243 IKEKSSCSTIYLDDSTVSQPNLKNTVRCVALAIYYHIKNRMSERRLDIFDEKLHPLSKEG 422
+K+ SSCSTIYLDDSTVSQPNLKNTV+CV+LAIYYHIKNR S+RRLDIFDEKLHPL+ +
Sbjct: 159 MKKSSSCSTIYLDDSTVSQPNLKNTVKCVSLAIYYHIKNRQSDRRLDIFDEKLHPLTHDQ 218
Query: 423 VSDDY 437
V D+Y
Sbjct: 219 VPDNY 223
Score = 66.1 bits (154), Expect = 4e-11
Identities = 34/53 (64%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Frame = +1
Query: 79 SSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIEN-GMTRKRSQHQIA 234
+ N+QHISERE +G+ DPS DP A T+F+ERSK +EN GMTRKRSQ QIA
Sbjct: 79 NQQNLQHISEREALEGEEDPSVDPTAATMFLERSK--VENGGMTRKRSQQQIA 129
>AE014134-2099|AAF53122.1| 406|Drosophila melanogaster CG14939-PA
protein.
Length = 406
Score = 117 bits (281), Expect = 1e-26
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = +3
Query: 243 IKEKSSCSTIYLDDSTVSQPNLKNTVRCVALAIYYHIKNRMSERRLDIFDEKLHPLSKEG 422
+K+ SSCSTIYLDDSTVSQPNLKNTV+CV+LAIYYHIKNR S+RRLDIFDEKLHPL+ +
Sbjct: 159 MKKSSSCSTIYLDDSTVSQPNLKNTVKCVSLAIYYHIKNRQSDRRLDIFDEKLHPLTHDQ 218
Query: 423 VSDDY 437
V D+Y
Sbjct: 219 VPDNY 223
Score = 66.1 bits (154), Expect = 4e-11
Identities = 34/53 (64%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Frame = +1
Query: 79 SSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIEN-GMTRKRSQHQIA 234
+ N+QHISERE +G+ DPS DP A T+F+ERSK +EN GMTRKRSQ QIA
Sbjct: 79 NQQNLQHISEREALEGEEDPSVDPTAATMFLERSK--VENGGMTRKRSQQQIA 129
>Y17111-1|CAA76635.1| 1365|Drosophila melanogaster Nup154 protein.
Length = 1365
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 462 LMLWIVFINSHHSHLLCSKDEVSHQKYLTCAQTFYSLCDSK*QV 331
+ LW + +NSH L+C + HQK LTC+ TF L ++ +V
Sbjct: 774 ISLWNI-LNSHSFQLICVQLSPEHQKLLTCS-TFRDLLITRSEV 815
>AF160944-1|AAD46884.1| 1365|Drosophila melanogaster Nup154 protein.
Length = 1365
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 462 LMLWIVFINSHHSHLLCSKDEVSHQKYLTCAQTFYSLCDSK*QV 331
+ LW + +NSH L+C + HQK LTC+ TF L ++ +V
Sbjct: 774 ISLWNI-LNSHSFQLICVQLSPEHQKLLTCS-TFRDLLITRSEV 815
>AF051398-1|AAC05386.1| 1365|Drosophila melanogaster nucleoporin
protein.
Length = 1365
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 462 LMLWIVFINSHHSHLLCSKDEVSHQKYLTCAQTFYSLCDSK*QV 331
+ LW + +NSH L+C + HQK LTC+ TF L ++ +V
Sbjct: 774 ISLWNI-LNSHSFQLICVQLSPEHQKLLTCS-TFRDLLITRSEV 815
>AF051397-1|AAC05385.1| 1349|Drosophila melanogaster nucleoporin
protein.
Length = 1349
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 462 LMLWIVFINSHHSHLLCSKDEVSHQKYLTCAQTFYSLCDSK*QV 331
+ LW + +NSH L+C + HQK LTC+ TF L ++ +V
Sbjct: 758 ISLWNI-LNSHSFQLICVQLSPEHQKLLTCS-TFRDLLITRSEV 799
>AF051396-2|AAC06248.1| 1349|Drosophila melanogaster nucleoporin
protein.
Length = 1349
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 462 LMLWIVFINSHHSHLLCSKDEVSHQKYLTCAQTFYSLCDSK*QV 331
+ LW + +NSH L+C + HQK LTC+ TF L ++ +V
Sbjct: 758 ISLWNI-LNSHSFQLICVQLSPEHQKLLTCS-TFRDLLITRSEV 799
>AF051396-1|AAC06247.1| 1365|Drosophila melanogaster nucleoporin
protein.
Length = 1365
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 462 LMLWIVFINSHHSHLLCSKDEVSHQKYLTCAQTFYSLCDSK*QV 331
+ LW + +NSH L+C + HQK LTC+ TF L ++ +V
Sbjct: 774 ISLWNI-LNSHSFQLICVQLSPEHQKLLTCS-TFRDLLITRSEV 815
>AE014134-2012|AAF53050.2| 1123|Drosophila melanogaster CG4579-PB,
isoform B protein.
Length = 1123
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 462 LMLWIVFINSHHSHLLCSKDEVSHQKYLTCAQTFYSLCDSK*QV 331
+ LW + +NSH L+C + HQK LTC+ TF L ++ +V
Sbjct: 532 ISLWNI-LNSHSFQLICVQLSPEHQKLLTCS-TFRDLLITRSEV 573
>AE014134-2011|AAF53051.1| 1365|Drosophila melanogaster CG4579-PA,
isoform A protein.
Length = 1365
Score = 31.9 bits (69), Expect = 0.70
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -2
Query: 462 LMLWIVFINSHHSHLLCSKDEVSHQKYLTCAQTFYSLCDSK*QV 331
+ LW + +NSH L+C + HQK LTC+ TF L ++ +V
Sbjct: 774 ISLWNI-LNSHSFQLICVQLSPEHQKLLTCS-TFRDLLITRSEV 815
>DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.
Length = 1715
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 25 PIRKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIENGM 204
P +K LE PE + S + + S+ E GD D DP+ G + R + S E
Sbjct: 417 PNQKSDSSLESSSPERQDSESESRQASDEESSSGDSDYLIDPVTGWL-SRRRETSTEREE 475
Query: 205 TRKRSQHQIAD 237
+SQ + ++
Sbjct: 476 KSDQSQQESSE 486
>AE014298-1758|AAN09642.1| 330|Drosophila melanogaster CG32655-PA
protein.
Length = 330
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +1
Query: 19 PSPIRKDIVKLEDYLPEGEVSSNNIQHIS-EREPDDGDIDPSQDPMAGTIFMERSKASIE 195
P+ +VK P G +S I+ ER P + + + P ER KAS
Sbjct: 95 PATSASSVVKKSSEKPSGSRTSPIIKSARLERRPSNKSVTIADPPTQSLTTSERPKASSS 154
Query: 196 NGMTRKRSQHQI 231
G+ +K ++ +
Sbjct: 155 QGLKKKENRRSL 166
>BT003751-1|AAO41415.1| 286|Drosophila melanogaster RH56454p
protein.
Length = 286
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 420 LLCSKDEVSHQKYLTCAQTFYSLC 349
++C +D V+H K L C F++ C
Sbjct: 166 IICREDMVNHSKKLPCGHIFHTTC 189
>AY060677-1|AAL28225.1| 626|Drosophila melanogaster GH11117p
protein.
Length = 626
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 420 LLCSKDEVSHQKYLTCAQTFYSLC 349
++C +D V+H K L C F++ C
Sbjct: 290 IICREDMVNHSKKLPCGHIFHTTC 313
>AE014297-4807|AAF57196.2| 626|Drosophila melanogaster CG1937-PA
protein.
Length = 626
Score = 28.7 bits (61), Expect = 6.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 420 LLCSKDEVSHQKYLTCAQTFYSLC 349
++C +D V+H K L C F++ C
Sbjct: 290 IICREDMVNHSKKLPCGHIFHTTC 313
>AY119044-1|AAM50904.1| 149|Drosophila melanogaster LP06572p
protein.
Length = 149
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 405 DEVSHQKYLTCAQTFYSLCDSK*QVLHTSQCFSN 304
DEV HQK CA+T DS + H CF N
Sbjct: 105 DEV-HQKIAHCAETHSKEGDSCSKAYHAGMCFMN 137
>AE014297-4417|AAF56921.1| 149|Drosophila melanogaster CG7592-PA
protein.
Length = 149
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 405 DEVSHQKYLTCAQTFYSLCDSK*QVLHTSQCFSN 304
DEV HQK CA+T DS + H CF N
Sbjct: 105 DEV-HQKIAHCAETHSKEGDSCSKAYHAGMCFMN 137
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,719,097
Number of Sequences: 53049
Number of extensions: 454907
Number of successful extensions: 1227
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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