Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0859
(613 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15313-10|AAP68920.1| 355|Caenorhabditis elegans Hypothetical p... 90 1e-18
L15313-9|AAP68921.1| 357|Caenorhabditis elegans Hypothetical pr... 90 1e-18
Z50741-3|CAA90611.1| 212|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z72506-7|CAA96620.2| 293|Caenorhabditis elegans Hypothetical pr... 29 3.5
U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 28 6.0
AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical ... 28 6.0
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 28 6.0
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 28 6.0
>L15313-10|AAP68920.1| 355|Caenorhabditis elegans Hypothetical
protein ZK353.1a protein.
Length = 355
Score = 90.2 bits (214), Expect = 1e-18
Identities = 38/64 (59%), Positives = 55/64 (85%), Gaps = 3/64 (4%)
Frame = +3
Query: 243 IKEKSSCSTIYLDDSTVSQPNLKNTVRCVALAIYYHI---KNRMSERRLDIFDEKLHPLS 413
+++ SSCSTIY+DDSTVSQP+LKNT++C++LAIYYHI KNR ER ++IF+E+LHP+
Sbjct: 112 LRKSSSCSTIYIDDSTVSQPHLKNTIKCISLAIYYHISNRKNRGHERLMEIFEERLHPIF 171
Query: 414 KEGV 425
++ +
Sbjct: 172 RDPI 175
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 64 PEGEVSSNNIQHISEREPDDG-DIDPSQDPMAGTIFMERSKASIE 195
P E S+N + HISERE +G + DPS +P A FMERSK+ ++
Sbjct: 40 PRDETSTNFLPHISEREVTEGYEEDPSTNPTARPTFMERSKSEMK 84
>L15313-9|AAP68921.1| 357|Caenorhabditis elegans Hypothetical
protein ZK353.1b protein.
Length = 357
Score = 90.2 bits (214), Expect = 1e-18
Identities = 38/64 (59%), Positives = 55/64 (85%), Gaps = 3/64 (4%)
Frame = +3
Query: 243 IKEKSSCSTIYLDDSTVSQPNLKNTVRCVALAIYYHI---KNRMSERRLDIFDEKLHPLS 413
+++ SSCSTIY+DDSTVSQP+LKNT++C++LAIYYHI KNR ER ++IF+E+LHP+
Sbjct: 114 LRKSSSCSTIYIDDSTVSQPHLKNTIKCISLAIYYHISNRKNRGHERLMEIFEERLHPIF 173
Query: 414 KEGV 425
++ +
Sbjct: 174 RDPI 177
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 64 PEGEVSSNNIQHISEREPDDG-DIDPSQDPMAGTIFMERSKASIE 195
P E S+N + HISERE +G + DPS +P A FMERSK+ ++
Sbjct: 42 PRDETSTNFLPHISEREVTEGYEEDPSTNPTARPTFMERSKSEMK 86
>Z50741-3|CAA90611.1| 212|Caenorhabditis elegans Hypothetical
protein F55G7.3 protein.
Length = 212
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = +1
Query: 112 EPDDGDIDPSQDPMAGTIFMERSKAS-------IENGMTRKRSQHQIADNKLKKRVPVLQ 270
E D DPS +P G+ F+ +K S ++ RK+S+ KLK++VP Q
Sbjct: 12 ESSDDSYDPSYNPKLGSGFLSVTKISEKMRKSQLKERRLRKQSKVSKCAKKLKRKVPTRQ 71
>Z72506-7|CAA96620.2| 293|Caenorhabditis elegans Hypothetical
protein F07A5.6 protein.
Length = 293
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 19 PSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDIDPSQDPMAGT 162
P+P + + ED + E EV + E E DDG++ +DP+ T
Sbjct: 104 PTPDEPEFYEEED-VDESEVVEEDYAQEEEEEGDDGEVVEYEDPVVVT 150
>U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical protein
C01B7.1a protein.
Length = 935
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 19 PSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDIDPSQDP 150
P P R DI KL+ G++ I+ + E +DG +PS+ P
Sbjct: 879 PLPTRSDIEKLQILASGGDLKIGGIEKYLKEECEDG--EPSEAP 920
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 16 SPSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDID 135
SP PI I ++ D PEG ++N E PDDGDID
Sbjct: 231 SPEPIPVKI-EVPDVPPEGTSAANE-----EPMPDDGDID 264
>AL117204-6|CAB55149.2| 833|Caenorhabditis elegans Hypothetical
protein Y116A8C.13 protein.
Length = 833
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 123 WRHRSIARSDGWHHF 167
WRH S +D WHHF
Sbjct: 794 WRHFSPRHADTWHHF 808
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 16 SPSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDID 135
SP PI I ++ D PEG ++N E PDDGDID
Sbjct: 231 SPEPIPVKI-EVPDVPPEGTSAANE-----EPMPDDGDID 264
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 16 SPSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDID 135
SP PI I ++ D PEG ++N E PDDGDID
Sbjct: 231 SPEPIPVKI-EVPDVPPEGTSAANE-----EPMPDDGDID 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,142
Number of Sequences: 27780
Number of extensions: 244025
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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