Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0859
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   2.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   2.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.5  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 163 IFMERSKASIENGMTRKRSQHQIADNKLKKRVP 261
           +++ +SKAS E+G  +K+++    D    ++ P
Sbjct: 198 LWVYKSKASEEHGNKKKKNKEDEDDGATPRKAP 230


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 371 LRHSILYVIVNSKCYTPHSVFQIW 300
           L+ +++ + V   C+TP+ V  +W
Sbjct: 259 LKMTVIIIAVFFICWTPYYVMSLW 282


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 WLAPFSWNVLKLQ*RMV*LGSG 217
           WL  +SW + K    M+ +G G
Sbjct: 322 WLEQYSWALFKAMSHMLCIGYG 343


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 152 WLAPFSWNVLKLQ*RMV*LGSG 217
           WL  +SW + K    M+ +G G
Sbjct: 290 WLEQYSWALFKAMSHMLCIGYG 311


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 398 FLIKNI*PALRHSILYVIVN 339
           FL+KNI P L+ ++   ++N
Sbjct: 599 FLVKNIIPKLQIALSEFVIN 618


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 252 FL*FIVSYLMLAPLPSHTILY*SFRTFHENGASHRILRWIDVAIIRL 112
           +L F +  + L+ + +  +L  +FR+      +HR+ RW+ V  I++
Sbjct: 302 YLLFTMVLVTLSVVVTIAVLNVNFRS----PVTHRMARWVRVVFIQV 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,469
Number of Sequences: 438
Number of extensions: 2877
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)