Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0859
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61150.2 68418.m07672 leo1-like family protein weak similarit... 29 1.8
At5g61150.1 68418.m07671 leo1-like family protein weak similarit... 29 1.8
At2g33500.2 68415.m04107 zinc finger (B-box type) family protein 28 5.6
At2g33500.1 68415.m04106 zinc finger (B-box type) family protein 28 5.6
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica... 28 5.6
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 7.4
At1g48580.1 68414.m05432 expressed protein 27 7.4
At4g31150.2 68417.m04421 endonuclease V family protein contains ... 27 9.8
At4g31150.1 68417.m04422 endonuclease V family protein contains ... 27 9.8
>At5g61150.2 68418.m07672 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 623
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 67 EGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIENGMTRKRSQHQIADNK 243
E E SS E E D D D ++ G + +R + +E+G R +H ++++
Sbjct: 83 EREQSSQEADPQEESEARDSDSDNKEEEHGGRVAKKRRQEVVESGSERSGEKHYESEDE 141
>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04004: Leo1-like protein;
supporting cDNA gi|21929714|gb|AF490422.1|
Length = 625
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 67 EGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERSKASIENGMTRKRSQHQIADNK 243
E E SS E E D D D ++ G + +R + +E+G R +H ++++
Sbjct: 83 EREQSSQEADPQEESEARDSDSDNKEEEHGGRVAKKRRQEVVESGSERSGEKHYESEDE 141
>At2g33500.2 68415.m04107 zinc finger (B-box type) family protein
Length = 401
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 196 NGMTRKRSQHQIADNKLKKRVPVLQFT*MIVLC 294
N ++RK + QI DN K+ V V FT +VLC
Sbjct: 43 NLLSRKHVRSQICDNCSKEPVSVRCFTDNLVLC 75
>At2g33500.1 68415.m04106 zinc finger (B-box type) family protein
Length = 402
Score = 27.9 bits (59), Expect = 5.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 196 NGMTRKRSQHQIADNKLKKRVPVLQFT*MIVLC 294
N ++RK + QI DN K+ V V FT +VLC
Sbjct: 43 NLLSRKHVRSQICDNCSKEPVSVRCFTDNLVLC 75
>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P46100
Transcriptional regulator ATRX {Homo sapiens}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain;
non-consensus GC donor splice site at exon boundary
28614
Length = 1457
Score = 27.9 bits (59), Expect = 5.6
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Frame = +1
Query: 1 CCCYRSPSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPDDGDIDPSQDPMAGTIFMERS 180
CCC SP P+++ ++LE + + + + S+ D+ +D D ++S
Sbjct: 539 CCC--SPIPLQRLTLELEKAMRDKKSIELSSDSSSDSSSDNNSVDTDADVNVTISSKKKS 596
Query: 181 KAS----IENGMTRKRSQHQIADNKLK-KRVPVLQFT 276
K I++ K ++ +IA K + +R+ LQF+
Sbjct: 597 KKKIRRIIDDAELGKDTRTKIAIEKARQERLRSLQFS 633
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 70 GEVSSNNIQHISEREPDDGDIDPSQDP 150
GE + +++ E E DDGD DP +DP
Sbjct: 1145 GEAVNMEVENQDE-EDDDGDDDPEEDP 1170
>At1g48580.1 68414.m05432 expressed protein
Length = 454
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 112 EPDDGDIDPSQDPMAGTIFMERSKASIENG 201
EPD D D S+DP T+ RS+ + NG
Sbjct: 119 EPDWEDKDFSEDPWVSTVDYIRSEGLLSNG 148
>At4g31150.2 68417.m04421 endonuclease V family protein contains
Pfam PF04493: Endonuclease V
Length = 263
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 4 CCYRSPSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPD 120
C YR P PIR+ ++ YL + + S + ++ R PD
Sbjct: 223 CKYRVPEPIRQADIRSRAYLQKHQTES--FKELAVRPPD 259
>At4g31150.1 68417.m04422 endonuclease V family protein contains
Pfam PF04493: Endonuclease V
Length = 277
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 4 CCYRSPSPIRKDIVKLEDYLPEGEVSSNNIQHISEREPD 120
C YR P PIR+ ++ YL + + S + ++ R PD
Sbjct: 237 CKYRVPEPIRQADIRSRAYLQKHQTES--FKELAVRPPD 273
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,919,808
Number of Sequences: 28952
Number of extensions: 217520
Number of successful extensions: 585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -