Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0858
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   6.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.3  

>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 434 TKEAQHHPIRHKHSHQA 484
           TK   HH I+ +H HQ+
Sbjct: 101 TKFNPHHEIKLQHLHQS 117


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 225 LGPSYKSGQVTSWLNALTNSKVLWPLLE 142
           +  + K G   + + A  +S V+WPL+E
Sbjct: 211 INENLKMGLDIASITAQASSFVVWPLVE 238


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 225 LGPSYKSGQVTSWLNALTNSKVLWPLLE 142
           +  + K G   + + A  +S V+WPL+E
Sbjct: 211 INENLKMGLDIASITAQASSFVVWPLVE 238


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 427 SLHQRGPTPSDPAQTQSPS 483
           ++HQ+GP    P   Q P+
Sbjct: 197 NMHQQGPPHQQPPIQQQPN 215


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 427 SLHQRGPTPSDPAQTQSPS 483
           ++HQ+GP    P   Q P+
Sbjct: 199 NMHQQGPPHQQPPIQQQPN 217


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,951
Number of Sequences: 336
Number of extensions: 2364
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)