Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0858
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    71   2e-13
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.0  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.6  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.8  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   8.8  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.8  
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom...    25   8.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 29/49 (59%), Positives = 39/49 (79%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ + ++  K P
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVP 72



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 37/93 (39%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXX 431
           L  RLKVPP I QF +TLDK TA  +FK+L KYRPET                       
Sbjct: 65  LNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQD 124

Query: 432 XXXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
              +P  ++ G N V  L+E K+   V+IA DV
Sbjct: 125 VSKKPYNVKYGLNHVVALIEAKKAKLVLIASDV 157


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 474  LCLCRIGWC 448
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 428 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 258
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +3

Query: 171 WSGHSANS*LVQICKMAQVY--PHPAPEGCLQRRLKVPPPINQFTQTLDKTTAKGLFKI 341
           W     +  + Q+ + AQ +  P PAPE  + +     PP     +  + T    +FKI
Sbjct: 347 WGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGECTICMEMFKI 405


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 484 WSRRKXAQLWSSLMMFXPIWXLGSSFPAQAVYCPVKKXGLVT 609
           WS R    L+S +     +W L S  P   V+    + GL+T
Sbjct: 243 WSLRAQKCLFSFIAHSDSVWALYSEHPDLKVFYAGDRSGLIT 284


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 318 TAKGLFKILEKYR 356
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 188

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 455 PIRHKHSHQAGREERXRSCGHR 520
           P  HKH++    +E   SC HR
Sbjct: 151 PNGHKHTYAEMTDEERNSCSHR 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,883
Number of Sequences: 5004
Number of extensions: 36466
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)