Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0858
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 70 1e-12
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 70 1e-12
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 67 9e-12
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 29 3.0
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 28 5.2
09_03_0148 + 12770010-12770266,12772172-12772314,12773214-127735... 28 6.8
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 6.8
01_01_0697 - 5389071-5389487,5390301-5390390,5390472-5390536,539... 28 6.8
06_01_0552 - 3935804-3936145,3936247-3936346,3936600-3936725,393... 27 9.0
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/92 (42%), Positives = 50/92 (54%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 63 LKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVE 121
Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
+P ++ G N VT L+E+ + VVIAHDV
Sbjct: 122 AKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDV 153
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ + K P
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVP 70
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/92 (42%), Positives = 50/92 (54%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 47 LKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVE 105
Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
+P ++ G N VT L+E+ + VVIAHDV
Sbjct: 106 AKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDV 137
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ + K P
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVP 54
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 67.3 bits (157), Expect = 9e-12
Identities = 30/49 (61%), Positives = 34/49 (69%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ V K P
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVP 71
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/92 (32%), Positives = 46/92 (50%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
L++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 64 LKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAEA-----------------EGKTVE 106
Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
+P ++ G + VT L+E+ + VVIAHDV
Sbjct: 107 AKKPIVVKYGLDHVTYLIEQSKAQLVVIAHDV 138
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 219 AQVYPHPAPEGCLQRRLKVPPPINQFTQTLDKTTA 323
AQ++ P+P+ L RL+ PPP ++ D+ TA
Sbjct: 101 AQLHNEPSPDDNLPSRLRRPPPPPRWMPATDEGTA 135
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 416 QER*ASTKEAQHHPIRHKHSHQAGREERXRSCGHR 520
QER A + + H RH H H A + + GHR
Sbjct: 685 QER-ARRRHKRAHSHRHSHHHDAHKRHKTELAGHR 718
>09_03_0148 +
12770010-12770266,12772172-12772314,12773214-12773596,
12773895-12773971,12774061-12774211
Length = 336
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = -1
Query: 593 FLTGQ*TAWAGKEEPXLQIGXNIMSDDHSCAFFLLDQLGDCVCAGSDGVGPLWWRLIFLG 414
F+ G A + + P Q+ ++ S C +FL D++ + + A + G G L I +G
Sbjct: 244 FIAGWSIATSAENGPAFQLAISLFS----CIYFLNDKMKNLMRASTTGFGVLVGGWI-IG 298
Query: 413 NLSFSSFPQPLFPGCFSL 360
+L P + P +SL
Sbjct: 299 SLLVPLIPTFIIPPSWSL 316
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 178 PDQ*QSSLASSRREDSRSSWAQPF*PPMGRR 86
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
>01_01_0697 -
5389071-5389487,5390301-5390390,5390472-5390536,
5391106-5391176,5391297-5391335,5392938-5393350
Length = 364
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -2
Query: 325 LAVVLSSV--WVNWLIGGGTFRRR*RQPSGAG 236
LAV L S+ WV L+GGG +RRR R +G G
Sbjct: 37 LAVALHSLLLWVFLLVGGGGWRRR-RGDAGEG 67
>06_01_0552 -
3935804-3936145,3936247-3936346,3936600-3936725,
3936802-3936991,3937105-3937338,3937640-3937788,
3937890-3938073,3938159-3938195,3938293-3938508
Length = 525
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 572 AWAGKEEPXLQIGXNIMSDDHSCAFFLLDQLG 477
AW G+ G ++++D +F+ LDQLG
Sbjct: 312 AWVGESGGAYNSGRHLVTDSFVFSFWFLDQLG 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,663,149
Number of Sequences: 37544
Number of extensions: 291630
Number of successful extensions: 794
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -