Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0858
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        47   1e-05
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   5.3  
SB_57776| Best HMM Match : EB (HMM E-Value=2.9)                        28   7.0  
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 40/92 (43%), Positives = 49/92 (53%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
           L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET                       
Sbjct: 70  LYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAP 129

Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
             +P  ++ G N +T LVE K+   VVIAHDV
Sbjct: 130 GKKPMLVKYGINHITSLVENKKAQLVVIAHDV 161



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAV 255
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSL 69


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 25/67 (37%), Positives = 31/67 (46%)
 Frame = +3

Query: 330 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKEXAA 509
           LFK+L KYRPET                         +P  ++ G N +T LVE K+   
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 510 VVIAHDV 530
           VVIAHDV
Sbjct: 64  VVIAHDV 70


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 443 PLWWRLIFLGNLSFSSFPQPLFPG 372
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
          Length = 669

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 126 DRESSLREEAKELCYWSGH 182
           DR  ++ E  KE+CYW GH
Sbjct: 187 DRRKNMEERHKEMCYW-GH 204


>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 126 DRESSLREEAKELCYWSGH 182
           DR  ++ E  KE+CYW GH
Sbjct: 137 DRRKNMEERHKEMCYW-GH 154


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 428 ASTKEAQHHPIRHKHSHQAGREERXRSCGHRS 523
           A  +  +H   +HKH H+ G+ +      HRS
Sbjct: 475 AKKESRKHKKHKHKHEHKEGQHKGSHRSSHRS 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,783
Number of Sequences: 59808
Number of extensions: 295274
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)