Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0858
         (617 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal prot...    97   2e-20
AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p pro...    97   2e-20
AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,...    97   2e-20
AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,...    97   2e-20
AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,...    97   2e-20
BT011064-1|AAR31135.1|  124|Drosophila melanogaster HL01742p pro...    29   5.0  
AE014298-1248|AAF46425.1|  124|Drosophila melanogaster CG3898-PA...    29   5.0  

>X82782-1|CAA58023.1|  271|Drosophila melanogaster ribosomal protein
           L7a protein.
          Length = 271

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 48/92 (52%), Positives = 60/92 (65%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
           LQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+                       
Sbjct: 75  LQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESALAKNVRLKKIAEAKAKGKDVEP 134

Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
             +P+ + +GTNTVTKL+E+K+   VVIAHDV
Sbjct: 135 KKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDV 166



 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 37/49 (75%), Positives = 39/49 (79%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAV     K P
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVP 82


>AY089570-1|AAL90308.1|  271|Drosophila melanogaster RE05022p
           protein.
          Length = 271

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 48/92 (52%), Positives = 60/92 (65%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
           LQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+                       
Sbjct: 75  LQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEP 134

Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
             +P+ + +GTNTVTKL+E+K+   VVIAHDV
Sbjct: 135 KKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDV 166



 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 37/49 (75%), Positives = 39/49 (79%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAV     K P
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVP 82


>AE014298-903|AAF46169.1|  271|Drosophila melanogaster CG3314-PD,
           isoform D protein.
          Length = 271

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 48/92 (52%), Positives = 60/92 (65%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
           LQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+                       
Sbjct: 75  LQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEP 134

Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
             +P+ + +GTNTVTKL+E+K+   VVIAHDV
Sbjct: 135 KKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDV 166



 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 37/49 (75%), Positives = 39/49 (79%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAV     K P
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVP 82


>AE014298-902|AAN09172.1|  271|Drosophila melanogaster CG3314-PC,
           isoform C protein.
          Length = 271

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 48/92 (52%), Positives = 60/92 (65%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
           LQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+                       
Sbjct: 75  LQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEP 134

Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
             +P+ + +GTNTVTKL+E+K+   VVIAHDV
Sbjct: 135 KKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDV 166



 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 37/49 (75%), Positives = 39/49 (79%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAV     K P
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVP 82


>AE014298-901|AAN09170.1|  271|Drosophila melanogaster CG3314-PA,
           isoform A protein.
          Length = 271

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 48/92 (52%), Positives = 60/92 (65%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
           LQ+RLKVPPPI+QF+QTLDKTTA  LFK+LEKYRPE+                       
Sbjct: 75  LQKRLKVPPPIHQFSQTLDKTTAVKLFKLLEKYRPESPLAKKLRLKKIAEAKAKGKDVEP 134

Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
             +P+ + +GTNTVTKL+E+K+   VVIAHDV
Sbjct: 135 KKKPSYVSAGTNTVTKLIEQKKAQLVVIAHDV 166



 Score = 82.2 bits (194), Expect = 5e-16
 Identities = 37/49 (75%), Positives = 39/49 (79%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
           N LFEKRPKNF IGQ +QP RDLSRFVRWPKYIR+QRQKAV     K P
Sbjct: 34  NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVP 82


>BT011064-1|AAR31135.1|  124|Drosophila melanogaster HL01742p
           protein.
          Length = 124

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 271 FRRR*RQPSGAGCGY 227
           F+RR  QPSG GCGY
Sbjct: 37  FKRRLLQPSGCGCGY 51


>AE014298-1248|AAF46425.1|  124|Drosophila melanogaster CG3898-PA
           protein.
          Length = 124

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 271 FRRR*RQPSGAGCGY 227
           F+RR  QPSG GCGY
Sbjct: 37  FKRRLLQPSGCGCGY 51


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,602,157
Number of Sequences: 53049
Number of extensions: 456162
Number of successful extensions: 1937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1931
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2538517050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)