Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0858
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 83 1e-16
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 73 2e-13
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 73 2e-13
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 73 2e-13
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.023
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.1
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 27 8.1
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 8.1
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 8.1
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 8.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 83.4 bits (197), Expect = 1e-16
Identities = 41/92 (44%), Positives = 52/92 (56%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 71 LQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEV 130
Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
RPNT+R G NT+T+LVE + V+IAHDV
Sbjct: 131 TKRPNTVRHGVNTITRLVETRRAQLVLIAHDV 162
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+ K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP 78
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+ K P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP 181
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLD 311
LQ+RLKVPP INQF LD
Sbjct: 174 LQKRLKVPPTINQFRTALD 192
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+ K P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP 181
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 365
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 174 LQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 72.5 bits (170), Expect = 2e-13
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+ K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP 78
Score = 71.7 bits (168), Expect = 4e-13
Identities = 41/92 (44%), Positives = 52/92 (56%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 71 LQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES--------------------TEV 110
Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
RPNT+R G NT+T+LVE + V+IAHDV
Sbjct: 111 TKRPNTVRHGVNTITRLVETRRAQLVLIAHDV 142
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 407 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 288
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 280 LRSTNLPRHWTRLQLRA 330
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 217 WPKYIRIQRQKAVFSVV*KCPLRSTNLPRHWTRLQLRAFSRFW 345
W K + +QR++ S++ L T L R L AFSR W
Sbjct: 3722 WKKVLTLQRKRMAISLITASHLYKTELHR-GINFFLPAFSRLW 3763
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 476 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 345
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 476 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 345
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 476 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 345
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,713,321
Number of Sequences: 27780
Number of extensions: 218471
Number of successful extensions: 499
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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