Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0858
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.6  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 311 VQCLGKLVDRRGHFQTTLKTAFWRWMRIYLGHLT 210
           V+ L +L+     FQT  KTA W  +R+  G  T
Sbjct: 108 VRMLFELLYNAKDFQTFYKTAAWARLRMNSGMFT 141


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 311 VQCLGKLVDRRGHFQTTLKTAFWRWMRIYLGHLT 210
           V+ L +L+     FQT  KTA W  +R+  G  T
Sbjct: 108 VRMLFELLYNAKDFQTFYKTAAWARLRMNSGMFT 141


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 207 ICKMAQVYPHPAPEGCLQRRLKVPPPINQFTQT 305
           + + AQ Y   +  G L+ ++ VPP I QF+ T
Sbjct: 562 VARNAQGY---SARGTLEVQVMVPPTIQQFSFT 591


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 431 STKEAQHHPIRHKHSH 478
           ST    HH + H HSH
Sbjct: 410 STPGPHHHTMGHGHSH 425


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 401 SSFPQPLFPGCFSLRPVFLQ 342
           + FPQ  FP C   R  FL+
Sbjct: 145 AKFPQEFFPECKWSRKGFLR 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,171
Number of Sequences: 438
Number of extensions: 2932
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)