Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0858
         (617 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...    71   5e-13
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)            71   6e-13
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    30   1.4  
At5g07010.1 68418.m00794 sulfotransferase family protein similar...    28   5.7  
At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal...    27   7.5  
At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal...    27   7.5  
At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal...    27   7.5  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   7.5  

>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 40/92 (43%), Positives = 50/92 (54%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
           L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE                        
Sbjct: 61  LKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAE 119

Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
             +P  ++ G N VT L+E+ +   VVIAHDV
Sbjct: 120 SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDV 151



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +     K P
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 68


>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 39/92 (42%), Positives = 50/92 (54%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
           L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE                        
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSE 120

Query: 435 XXRPNTIRSGTNTVTKLVEKKEXAAVVIAHDV 530
             +P  ++ G N VT L+E+ +   VVIAHDV
Sbjct: 121 SKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDV 152



 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +     K P
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 69


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/75 (28%), Positives = 38/75 (50%)
 Frame = -1

Query: 524  MSDDHSCAFFLLDQLGDCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 345
            + D  +C F ++D++       + G+ P+  R +F   +  +S  QP  P CF L P  L
Sbjct: 956  LQDLTNCPFRVVDEI-------NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLL 1006

Query: 344  QNLEKALSCSLVQCL 300
              LE + +CS++  +
Sbjct: 1007 PELEYSEACSILNIM 1021


>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 359

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 530 NIMSDDHSCAFFLLDQLGDCVCAGSDGVGPLWWRLI 423
           NI S+  S +  LLDQ  D  C G  G GP W  ++
Sbjct: 205 NIKSE--SVSPVLLDQAFDLYCRGVIGFGPFWEHML 238


>At5g34940.3 68418.m04122 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 382

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 572 AWAGKEEPXLQIGXNIMSDDHSCAFFLLDQLG 477
           AW G+       G N++S+    +F+ LDQLG
Sbjct: 315 AWVGESGGAYNSGRNLVSNAFVYSFWYLDQLG 346


>At5g34940.2 68418.m04121 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 536

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 572 AWAGKEEPXLQIGXNIMSDDHSCAFFLLDQLG 477
           AW G+       G N++S+    +F+ LDQLG
Sbjct: 315 AWVGESGGAYNSGRNLVSNAFVYSFWYLDQLG 346


>At5g34940.1 68418.m04120 glycosyl hydrolase family 79 N-terminal
           domain-containing protein similar to beta-glucuronidase
           precursor [Scutellaria baicalensis] GI:8918740; contains
           Pfam profile PF03662: Glycosyl hydrolase family 79,
           N-terminal domain
          Length = 401

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 572 AWAGKEEPXLQIGXNIMSDDHSCAFFLLDQLG 477
           AW G+       G N++S+    +F+ LDQLG
Sbjct: 180 AWVGESGGAYNSGRNLVSNAFVYSFWYLDQLG 211


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 419 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 324
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,343,549
Number of Sequences: 28952
Number of extensions: 214244
Number of successful extensions: 587
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)