Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0857
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 144 1e-35
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 144 1e-35
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 144 1e-35
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 105 4e-24
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 2.7
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 27 2.7
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 26 3.6
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 4.8
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 26 4.8
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 6.3
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 6.3
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 144 bits (348), Expect = 1e-35
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +3
Query: 255 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA 434
RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCA
Sbjct: 53 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCA 112
Query: 435 IHAKRVTIMPKDIQLA 482
IH KRVTI PKD+QLA
Sbjct: 113 IHGKRVTIQPKDMQLA 128
Score = 105 bits (252), Expect = 5e-24
Identities = 49/52 (94%), Positives = 52/52 (100%)
Frame = +1
Query: 100 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREI 255
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREI
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREI 52
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 144 bits (348), Expect = 1e-35
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +3
Query: 255 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA 434
RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCA
Sbjct: 53 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCA 112
Query: 435 IHAKRVTIMPKDIQLA 482
IH KRVTI PKD+QLA
Sbjct: 113 IHGKRVTIQPKDMQLA 128
Score = 105 bits (252), Expect = 5e-24
Identities = 49/52 (94%), Positives = 52/52 (100%)
Frame = +1
Query: 100 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREI 255
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREI
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREI 52
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 144 bits (348), Expect = 1e-35
Identities = 70/76 (92%), Positives = 72/76 (94%)
Frame = +3
Query: 255 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA 434
RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+AIGALQEA EAYLV LFEDTNLCA
Sbjct: 53 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCA 112
Query: 435 IHAKRVTIMPKDIQLA 482
IH KRVTI PKD+QLA
Sbjct: 113 IHGKRVTIQPKDMQLA 128
Score = 105 bits (252), Expect = 5e-24
Identities = 49/52 (94%), Positives = 52/52 (100%)
Frame = +1
Query: 100 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREI 255
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREI
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREI 52
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 105 bits (253), Expect = 4e-24
Identities = 54/82 (65%), Positives = 68/82 (82%), Gaps = 6/82 (7%)
Frame = +3
Query: 255 RRYQKSTELLIRKLPFQRLVREIAQDF----KTD--LRFQSAAIGALQEASEAYLVGLFE 416
R+YQ+ST+LLI++LPF R+VREI+ +F TD LR+QS A+ LQEA+EA+LV LFE
Sbjct: 33 RKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTALQCLQEAAEAFLVHLFE 92
Query: 417 DTNLCAIHAKRVTIMPKDIQLA 482
DTNLCAIHAKRVTIM +D+QLA
Sbjct: 93 DTNLCAIHAKRVTIMQRDMQLA 114
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Frame = +1
Query: 175 ARKSAPSTGG--VKKPH--RYRPGTVALREI 255
A+KS + G + +P RYRPGT ALREI
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREI 32
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.6 bits (56), Expect = 2.7
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +3
Query: 216 TSLSPWYSGPS*NRRYQKSTELLIRKL--PFQRLVREIAQDFKTDLRFQSAAIGALQEAS 389
+S+ PWY GPS Y S L RK+ PF + +D T L + A G++++ S
Sbjct: 440 SSVCPWYQGPS-LLEYLDSMTHLERKVNAPFIMPIASKYKDLGTILEGKIEA-GSIKKNS 497
Query: 390 EAYLVGLFEDTNLCAIH 440
++ + + + AI+
Sbjct: 498 NVLVMPINQTLEVTAIY 514
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -1
Query: 467 LRHDGHTFGVNSTQVGVFEQANEISLACLLESSDGGRLETQI-SFEILSDFSHKTLERQL 291
LR+ T + + + QA LE S + Q+ SFEIL +TLE
Sbjct: 73 LRNKSLTINIEDIYLSIHPQAKNSLTRDELEQSQQALKQEQLDSFEILRKNFRETLEESS 132
Query: 290 TDKQLSR 270
++ +SR
Sbjct: 133 SNPNISR 139
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 95 KQWLVLNKQPVNLLEVKLRVNNLLQ 169
K++L L K PV L++ K N+L+
Sbjct: 12 KEYLALQKNPVELVDAKPATENILE 36
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -1
Query: 428 QVGVFEQANEISLACLLESSDGGRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTIS 249
Q+G F +AN I A + + E + EIL ER L+ K+ +R T+ +
Sbjct: 112 QIGAFFKANAIQPASRIANRKNNEKEDEFMAEILGSIDQDIPER-LSTKKGNRSHTTSNA 170
Query: 248 RR 243
+R
Sbjct: 171 KR 172
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 207 QEATSLSPWYSGPS*NRRYQKSTELLIRKL--PFQRLVREIAQDFKTDLRFQSAAIGAL 377
+EA+ Y GPS NRR + +E ++KL QRLV + K A+G +
Sbjct: 359 EEASHFIQTYLGPSNNRRRGRRSENPMQKLQQQLQRLVSSAKERPKATQLSLEGALGKI 417
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.4 bits (53), Expect = 6.3
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +3
Query: 258 RYQKSTELLIRKLPFQRLVREIAQ--DFKTDLRF---QSAAIGALQEASEAYLVGLFE 416
+++ S LLI P Q +RE+A DF +F + + A E EAY+ L E
Sbjct: 526 QFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQE 583
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 383 LLESSDGGRLETQISFEILSD 321
L + DGG+LE Q+ +++L D
Sbjct: 72 LFTTDDGGKLELQVYYQLLVD 92
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,482
Number of Sequences: 5004
Number of extensions: 40064
Number of successful extensions: 116
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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