Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0857
         (596 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.     155   1e-39
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.       128   1e-31

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score =  155 bits (375), Expect = 1e-39
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 255 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA 434
           RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA
Sbjct: 53  RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA 112

Query: 435 IHAKRVTIMPKDIQLA 482
           IHAKRVTIMPKDIQLA
Sbjct: 113 IHAKRVTIMPKDIQLA 128



 Score =  109 bits (262), Expect = 7e-26
 Identities = 52/52 (100%), Positives = 52/52 (100%)
 Frame = +1

Query: 100 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREI 255
           MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREI
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREI 52


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score =  128 bits (309), Expect = 1e-31
 Identities = 62/65 (95%), Positives = 64/65 (98%)
 Frame = +3

Query: 255 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCA 434
           RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCA
Sbjct: 51  RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA 110

Query: 435 IHAKR 449
           IHAKR
Sbjct: 111 IHAKR 115



 Score =  102 bits (244), Expect = 1e-23
 Identities = 48/50 (96%), Positives = 49/50 (98%)
 Frame = +1

Query: 106 RTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREI 255
           RTKQTARKSTGGKAPRKQLA KAARKSAP+TGGVKKPHRYRPGTVALREI
Sbjct: 1   RTKQTARKSTGGKAPRKQLARKAARKSAPATGGVKKPHRYRPGTVALREI 50


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,019
Number of Sequences: 2352
Number of extensions: 9928
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)