Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0854
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.64 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.64 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.64 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.64 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   0.84 
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    24   0.84 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   0.84 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.9  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.6  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    22   3.4  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    22   3.4  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   5.9  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   5.9  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   5.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.8  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   7.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = +2

Query: 71  GINDGR--ETGIDTQDLSELQQHGAEVPLASVRFRREGAHPGHQLQADHHGRSHTSAAL- 241
           G+N  R  E  + T+DL E+Q+   +    ++    + +       +DH  R +  A + 
Sbjct: 511 GMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMW 570

Query: 242 ---RL*QMEWVDNVVRLD 286
              +   ME++ +++RLD
Sbjct: 571 HENKEEMMEFLKSILRLD 588


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = +2

Query: 71  GINDGR--ETGIDTQDLSELQQHGAEVPLASVRFRREGAHPGHQLQADHHGRSHTSAAL- 241
           G+N  R  E  + T+DL E+Q+   +    ++    + +       +DH  R +  A + 
Sbjct: 511 GMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMW 570

Query: 242 ---RL*QMEWVDNVVRLD 286
              +   ME++ +++RLD
Sbjct: 571 HENKEEMMEFLKSILRLD 588


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = +2

Query: 71  GINDGR--ETGIDTQDLSELQQHGAEVPLASVRFRREGAHPGHQLQADHHGRSHTSAAL- 241
           G+N  R  E  + T+DL E+Q+   +    ++    + +       +DH  R +  A + 
Sbjct: 511 GMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMW 570

Query: 242 ---RL*QMEWVDNVVRLD 286
              +   ME++ +++RLD
Sbjct: 571 HENKEEMMEFLKSILRLD 588


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
 Frame = +2

Query: 71  GINDGR--ETGIDTQDLSELQQHGAEVPLASVRFRREGAHPGHQLQADHHGRSHTSAAL- 241
           G+N  R  E  + T+DL E+Q+   +    ++    + +       +DH  R +  A + 
Sbjct: 511 GMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKNSDHITRIYACATMW 570

Query: 242 ---RL*QMEWVDNVVRLD 286
              +   ME++ +++RLD
Sbjct: 571 HENKEEMMEFLKSILRLD 588


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 477 YVCSHRASVTQSSRRHSTTFRSAGENCSAAS 385
           Y C +++ +    + HS  +R +  +CS A+
Sbjct: 266 YTCVNKSMLNSHMKSHSNVYRYSCRDCSYAT 296


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 477 YVCSHRASVTQSSRRHSTTFRSAGENCSAAS 385
           Y C +++ +    + HS  +R +  +CS A+
Sbjct: 24  YTCVNKSMLNSHMKSHSNVYRYSCRDCSYAT 54


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 182 HPGHQLQADHHGRSHTSAA 238
           H GH + A HH  +H  AA
Sbjct: 325 HAGHHIHAQHHVVNHHVAA 343


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 262 GGQRGAAGQLAELPDVAAIGRPHHSAAAR 348
           GG  G  GQL    D +   RP H    R
Sbjct: 196 GGHSGFWGQLGAAVDESRTPRPKHDGRGR 224


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 288 LSSRTTLSTHSICYSRRAADVWERPWW 208
           ++S   L+   + Y  R AD+ E P W
Sbjct: 285 VASSVVLTVVVLNYHHRTADIHEMPQW 311


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 288 LSSRTTLSTHSICYSRRAADVWERPWW 208
           ++S   L+   + Y  R AD+ E P W
Sbjct: 285 VASSVVLTVVVLNYHHRTADIHEMPQW 311


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 288 LSSRTTLSTHSICYSRRAADVWERPWW 208
           ++S   L+   + Y  R AD+ E P W
Sbjct: 285 VASSVVLTVVVLNYHHRTADIHEMPQW 311


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 288 LSSRTTLSTHSICYSRRAADVWERPWW 208
           ++S   L+   + Y  R AD+ E P W
Sbjct: 285 VASSVVLTVVVLNYHHRTADIHEMPQW 311


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 288 LSSRTTLSTHSICYSRRAADVWERPWW 208
           ++S   L+   + Y  R AD+ E P W
Sbjct: 285 VASSVVLTVVVLNYHHRTADIHEMPQW 311


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 130 TWSRSSPRLCSFSARRCAPGPSAASRPP 213
           T  + SPR+ +     C P P+  SR P
Sbjct: 341 TGRKVSPRVNTIKHTSCIPTPNGDSRLP 368


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 130 TWSRSSPRLCSFSARRCAPGPSAASRPP 213
           T  + SPR+ +     C P P+  SR P
Sbjct: 341 TGRKVSPRVNTIKHTSCIPTPNGDSRLP 368


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +3

Query: 432 VCGSFV*RTPGDYKHKNEDRQHAHRSNPERF 524
           V G F    PG+  +     +HAH  +  ++
Sbjct: 151 VAGGFTCPAPGEVSNSGSFSRHAHPDDCRKY 181


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/31 (25%), Positives = 14/31 (45%)
 Frame = +3

Query: 432 VCGSFV*RTPGDYKHKNEDRQHAHRSNPERF 524
           V G F    PG+  +     +HAH  +  ++
Sbjct: 151 VAGGFTCPAPGEVSNSGSFSRHAHPDDCRKY 181


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 499 PIXRIPKGSKKPI 537
           P+ R+PK  KKP+
Sbjct: 213 PLLRLPKFKKKPL 225


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 187 GPSAASRPPWSLPY 228
           GP +  +PP  +PY
Sbjct: 67  GPPSGGQPPQGMPY 80


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory
          receptor candidate 61 protein.
          Length = 670

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 6  LVIALMCMGLYPNVCLHQGKRKVLTTE 86
          L++  + +GLYP+     GK + L T+
Sbjct: 13 LILLSLLLGLYPSYLQTVGKCQRLKTD 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,559
Number of Sequences: 336
Number of extensions: 2868
Number of successful extensions: 22
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)